Pairwise Alignments

Query, 601 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 551 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella loihica PV-4

 Score =  215 bits (547), Expect = 4e-60
 Identities = 161/594 (27%), Positives = 270/594 (45%), Gaps = 74/594 (12%)

Query: 9   VKRIRQRIAQGGDNAALKHKQNGQWQAINWHQFGEQLDELSMALLAQGIGVQDKIAIFSN 68
           V  +   + Q GD+  LK   NGQ+   +W +  +++ +++ AL   G+   DK+A+ S 
Sbjct: 9   VDMLHHWVEQYGDSTYLKQPINGQYVNYSWREVQQKMQQIAGALRHLGLEPGDKVAVLSK 68

Query: 69  NMPRWTIADFAALQIRAVTVPIYPTNTPEQAAYILQNADVKVVFVGEQ---AQFDAALSQ 125
           N   W I D A +    ++VPIYPT   +   Y+L++++ K +F+G+    A  +A +  
Sbjct: 69  NCAEWFITDLALMHGGYISVPIYPTANADTIRYVLEHSESKAIFIGKLDYWADQEAGVGG 128

Query: 126 FEQCPELRLIVAMNANIDLKQASCAMHWDEFVAQSHHQDRAPLDALIEQANYDDLFTLIY 185
                 LRL +  +             WD  +   H    A      E    + + T+IY
Sbjct: 129 ----DILRLAMPYDT------MPAQYQWDTLLKLGHPLVEA------EAPTPEQIMTIIY 172

Query: 186 TSGTTGTPKGVMLDYRNIGAQLEGHDQRLNLTQEDVSLCFLPLSHVFER-AWTAYVLYKG 244
           TSG+TG PKG +  + +         + L    ED  L +LPL+H+ ER A      Y G
Sbjct: 173 TSGSTGKPKGAIQTFASYEWTCRAVVRDLKTDVEDRLLSYLPLAHITERVAIEGSSFYSG 232

Query: 245 ATNCYLQDVAHVREALAEVRPTVMCAVPRFYEKIFSAIHEKV--VKAPLVRKVLFTWAVN 302
           ++  +++ +      +   RPTV  +VPR +      I +K+   K  ++ K+       
Sbjct: 233 SSVAFVESLDSFVADVQRARPTVFFSVPRLWSLFQKNIIDKIGYTKLNILLKI------- 285

Query: 303 MGAKMAVCRQQQRQPSWMLKQSHQFADKLVLSKLRALLG-GRINFMPCGGAKLDETIGRF 361
                                   F   LV  K+   LG    + +  G A +  ++  +
Sbjct: 286 -----------------------PFVSSLVKKKIHQGLGLEHCHLLGSGSAPIPPSLIAW 322

Query: 362 FHAIGINVKLGYGMTETTATVSCWDDHCFNPDSIGL---SMPGAQVKIGENNEILVRGPM 418
           +H IG+N+   +GMTE +A      +H F+   IG    ++ G  VK G+N E+L++ P 
Sbjct: 323 YHKIGLNICEAWGMTENSAYSII--NHPFDASKIGTVGRAVEGCSVKQGDNGELLIKSPG 380

Query: 419 VMRGYYKLDKETTESFDEQGFLKTGDAGHIDENGNLFITDRIKELMKTSGGKYIAPQVIE 478
           +M GYYK  + T  SFDE G+ +TGD   ID +G + IT R+K+  KT+ GKY+AP  IE
Sbjct: 381 LMSGYYKQPEVTQASFDEDGYFRTGDLCSIDADGCVTITGRVKDNFKTAKGKYVAPVPIE 440

Query: 479 GAIGKDHFIEQIAVIADTRKFVSALIVPCFDSLEEYAKELNIKYHDRLELIKHSQVLEMF 538
             + +D  +E I +I        AL+      L E A            L    +V    
Sbjct: 441 RKLAQDPHVELICIIGSGLPHPVALV-----QLSEGA-----------ALQPKEEVRASL 484

Query: 539 EKRVNELQKELAKFEQVKKFRLLPKAFSMDSGELTPTQKLRRKVINDRYQDEIE 592
           +  ++ +   L   E V    ++ + + +D+  LTPT K++R V+  R+  ++E
Sbjct: 485 KATLDSINPNLESHETVDAIIVVSEPWDVDNDVLTPTLKIKRHVLEQRFSAKVE 538