Pairwise Alignments

Query, 601 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., long-chain-fatty-acid--CoA ligase (RefSeq) from Shewanella loihica PV-4

 Score =  102 bits (253), Expect = 6e-26
 Identities = 117/504 (23%), Positives = 208/504 (41%), Gaps = 98/504 (19%)

Query: 61  DKIAIFSNNMPRWTIADFAALQIRAVTVPIYPTNTPEQAAYILQNADVKVVFVGEQAQFD 120
           D++AI   N+ ++ IA F  L+   V V + P  TP +  + L ++  K + V   + F 
Sbjct: 75  DRVAIMMPNLLQYPIALFGILRAGMVVVNVNPLYTPRELKHQLNDSGAKAIVV--VSNFA 132

Query: 121 AALSQFEQCPELRLIVAMNANIDLKQA------SCAMHWDEFVAQSHHQDRA-------- 166
             L Q  +   ++ ++      DL  A      +  + + + +   +H   A        
Sbjct: 133 NTLEQVVEQTPVKSVILTGLG-DLLSAPKRTLVNFVVKYIKKMVPKYHLPHAISMRQSLS 191

Query: 167 ---PLDALIEQANYDDLFTLIYTSGTTGTPKGVMLDYRNIGAQLEGHDQR---LNLTQED 220
               L  +      DD+  L YT GTTG  KG ML + NI + L   D     L    ++
Sbjct: 192 KGRRLQYVKPTIKGDDIAFLQYTGGTTGVSKGAMLTHGNIVSNLLQADAAYSPLLADGKE 251

Query: 221 VSLCFLPLSHVFERAWTAYV-LYKGATNCYLQDVAHVREALAEVRP---TVMCAVPRFYE 276
             +  LPL H+F       + L+KGA N  + +   +   ++E++    T +  V   + 
Sbjct: 252 FVVTALPLYHIFALTVNCLLFLHKGANNLLITNPRDIPAFVSELKKHPFTALTGVNTLFN 311

Query: 277 KIFSAIHEKVVKAPLVRKVLFTWAVNMGAKMAVCRQQQRQPSWMLKQSHQFADKLV-LSK 335
            + S+   K +    ++       +++G  MAV R                ADK   ++K
Sbjct: 312 ALVSSEEFKTLDFSNLK-------LSIGGGMAVQRA--------------VADKWQGITK 350

Query: 336 LRALLGGRINFMPCGGAKLDETIGRFFHAIGINVKLGYGMTETTATVSC--WDDHCFNPD 393
            R L G                               YG+TE +  ++C  ++   +N  
Sbjct: 351 TRLLEG-------------------------------YGLTEASPLLTCCPYNLEGYN-G 378

Query: 394 SIGLSMPGAQVKI----------GENNEILVRGPMVMRGYYKLDKETTESFDEQGFLKTG 443
           SIG  +    +++          GE  E+  +GP VM+GY++  +ET +  D+ G+L TG
Sbjct: 379 SIGFPVANTDMQVRDEEGNVLPQGETGELFAKGPQVMKGYWQRPEETAKVIDKDGYLATG 438

Query: 444 DAGHIDENGNLFITDRIKELMKTSGGKYIAPQVIEGAIGKDHFIEQIAVIA----DTRKF 499
           D G++DE G  FI DR K+++  SG   + P  +E  +     + ++A +      + + 
Sbjct: 439 DIGYMDEQGFFFIVDRKKDMILVSGFN-VFPNEVEEVVALHPKVLEVAAVGVPHEVSGEL 497

Query: 500 VSALIVPCFDSLEEYAKELNIKYH 523
           V   +VP   SL E     + ++H
Sbjct: 498 VKVFVVPKDKSLTEEQVIKHCRHH 521