Pairwise Alignments

Query, 601 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 549 a.a., AMP-binding protein from Methanococcus maripaludis JJ

 Score =  115 bits (287), Expect = 6e-30
 Identities = 144/573 (25%), Positives = 235/573 (41%), Gaps = 118/573 (20%)

Query: 38  WHQFGEQLDELSMALLAQGIGVQDKIAIFSNNMPRWTIADFAALQIRAVTVPIYPTNTPE 97
           + +F E+ D L+  LL  GI   D I I++ N+P W    FA  +I  V V +       
Sbjct: 36  YKEFDERTDLLAKGLLEIGIKKGDHIGIWARNVPDWLTFMFATAKIGVVLVTVNTAYKSH 95

Query: 98  QAAYILQNADVKVVFVGEQAQFDAALSQFEQCPELRLIVAMNANIDLKQASCAMHWDEF- 156
           + AY+++ +D+K +         A +  F     L ++  +   +   Q    ++ +EF 
Sbjct: 96  ELAYVMKQSDMKAL---------AIIDSFRDVNYLEILYELVPELKTSQRG-KLNSEEFP 145

Query: 157 -------VAQSHHQDRAPLDALIEQANY---------------DDLFTLIYTSGTTGTPK 194
                  V Q  H+     + L+    Y               DD+  + YTSGTTG PK
Sbjct: 146 YLKNVIYVGQEKHRGMYNTNELMLLGKYVSDEKLIEAKKGLDSDDVINMQYTSGTTGFPK 205

Query: 195 GVMLDYRNIGAQLEGHDQRLNLTQEDVSLCFLPLSHVFERA-WTAYVLYKGATNCYLQ-- 251
           GVML ++NI        ++   T+E+     +PL H F        +L  G T   L+  
Sbjct: 206 GVMLTHKNILNNGYYIGEKQKFTEEERLCLPVPLFHCFGIVLGVLALLTHGGTLVMLEIF 265

Query: 252 DVAHVREALAEVRPTVMCAVPRFYEKIFSAIHEKVVKAPLVRKVLFTWAVNMGAKMAVCR 311
           D   V  A+ + + T +  VP  +   F                                
Sbjct: 266 DPLLVLAAIQKEKCTAVYGVPTMFIAEF-------------------------------- 293

Query: 312 QQQRQPSWMLKQSHQFADKLVLSKLRALLGGRINFMPCGGAKLDETIG-RFFHAIGINVK 370
                       SH   +   LS LR    G +    C    + + +   + H I I+  
Sbjct: 294 ------------SHPMFEMFDLSSLRT---GIMAGSTCPIEAMKKVMSDMYMHEITIS-- 336

Query: 371 LGYGMTETTA--TVSCWDDHC-FNPDSIGLSMPGAQVKI-----------GENNEILVRG 416
             YG+TE +   T++  DD      +S+G +MP  +VKI           G   EI  RG
Sbjct: 337 --YGLTEASPVFTMTSVDDPFEKRVESVGKAMPHCEVKIIDPETGKTLAPGNVGEICCRG 394

Query: 417 PMVMRGYYKLDKETTESFDEQGFLKTGDAGHIDENGNLFITDRIKELMKTSGGKYIAPQV 476
             VM+GYYK+ ++T E  ++ G+L +GD    DE+G   I  RIK+++   GG+ I P+ 
Sbjct: 395 YNVMKGYYKMPEKTAEVIEKDGWLHSGDLAVEDEDGYYKIVGRIKDMI-IRGGENIYPRE 453

Query: 477 IEGAIGKDHFIE--QIAVIADTR--KFVSALIVP--CFDSLEEYAKELNIKYHDRLELIK 530
           IE  +     I   Q+  I D +  + V A ++P   ++  EE  ++  ++   R ++ K
Sbjct: 454 IEEFLYTLPGINDAQVVGIPDEKYGEIVGAFVIPKEGYEIKEEDVRDFALEKIARYKVPK 513

Query: 531 HSQVLEMF---------EKRVNELQKELAKFEQ 554
           H  V+E F         + ++ EL  EL K E+
Sbjct: 514 HVFVVEEFPMTASGKIQKFKLTELAVELLKKEK 546