Pairwise Alignments

Query, 601 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., AMP-binding family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 87.4 bits (215), Expect = 1e-21
 Identities = 72/274 (26%), Positives = 122/274 (44%), Gaps = 28/274 (10%)

Query: 23  AALKHKQNGQWQAINWHQFGEQLDELSMALLAQGIGVQDKIAIFSNNMPRWTIADFAALQ 82
           A + + Q+ +W   N+ Q+  ++D L+  LL  GIG  D+I I+S N   W +  FA  +
Sbjct: 54  AVVVNHQDIRW---NYRQYLARIDALAAGLLKLGIGPGDRIGIWSPNNIEWCLTQFATAK 110

Query: 83  IRAVTVPIYPTNTPEQAAYILQNADVKVVFVGEQAQFDAALS-------QFEQC------ 129
           I A+ V I P   PE+  Y L N   + V   ++ +    L        + ++C      
Sbjct: 111 IGAIMVCINPAYRPEELQYALTNVGCRAVICADKFKSSNYLQMLYTLAPELKECAAGQLQ 170

Query: 130 ----PELRLIVAMNANIDLKQASCAMHWDEFVAQSHHQDRAPLDALIEQANYDDLFTLIY 185
               PEL+ ++ M A    +++   +++D+ + +    D+A L+ +    +  D   + +
Sbjct: 171 AKALPELQFVIRMGA----EKSPGMLNFDDLLVEVSADDKAMLERIANGLSPYDAINIQF 226

Query: 186 TSGTTGTPKGVMLDYRNIGAQLEGHDQRLNLTQEDVSLCFLPLSHVFERAWTAYV-LYKG 244
           TSGTTG+PKG  L + NI        + +  T +D     +PL H F       V L KG
Sbjct: 227 TSGTTGSPKGATLSHHNILNNGYLVAEAMKFTCDDKLCIPVPLYHCFGMVLGNLVCLAKG 286

Query: 245 ATNCY---LQDVAHVREALAEVRPTVMCAVPRFY 275
           A   +     D     E +   R T +  VP  +
Sbjct: 287 AAAVFPGDSFDPLTTLEVVERERCTALHGVPTMF 320



 Score = 56.6 bits (135), Expect = 3e-12
 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 24/142 (16%)

Query: 369 VKLGYGMTETTATVSCWDDHCFNPDS--------IGLSMPGAQVKI----------GENN 410
           V +GYG TE +       +H    DS        +G ++P  +VKI           +  
Sbjct: 364 VLIGYGQTECSPL-----NHITEIDSPVEKRVLTVGRALPHTEVKIVDEFGEVLPINQPG 418

Query: 411 EILVRGPMVMRGYYKLDKETTESFDEQGFLKTGDAGHIDENGNLFITDRIKELMKTSGGK 470
           E+  RG  +M+ Y+   ++T  + D +G+L +GD G +DE G + I  RIK+++   GG+
Sbjct: 419 EVCSRGYCIMQCYWNDPEKTAATIDREGWLHSGDIGQMDEQGYVQIVGRIKDMI-IRGGE 477

Query: 471 YIAPQVIEGAIGKDHFIEQIAV 492
            I P+ IE  +     ++  AV
Sbjct: 478 NIYPREIEEKLYTHKDVQDAAV 499