Pairwise Alignments

Query, 601 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., AMP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  202 bits (513), Expect = 4e-56
 Identities = 158/575 (27%), Positives = 266/575 (46%), Gaps = 58/575 (10%)

Query: 20  GDNAALKHKQNGQWQAINWHQFGEQLDELSMALLAQGIGVQDKIAIFSNNMPRWTIADFA 79
           GD   L+    GQ+    W++  E++ +L+ AL   G+   DKIA+ S N   W I D A
Sbjct: 20  GDEIYLRQPIKGQYLDFTWNEVQEKVQQLAGALRHLGLEPGDKIAVLSKNCAEWFITDLA 79

Query: 80  ALQIRAVTVPIYPTNTPEQAAYILQNADVKVVFVGEQAQFDAALSQFEQCPELRLIVAMN 139
            +    ++VPIYPT  P+   Y+LQ++  K +F+G+    D    Q        L +AM 
Sbjct: 80  LMHGGYISVPIYPTANPDTIRYVLQHSGAKAIFLGK---LDHWADQEAGVGGELLRLAMP 136

Query: 140 ANIDLKQASCAMHWDEFVAQSHHQDRAPLDALIEQANYDDLFTLIYTSGTTGTPKGVMLD 199
            +    Q      W++ +   +    APL         D + TLIYTSG+TG PKG +  
Sbjct: 137 YDTMPAQ----YQWEQLLNMGNPLIEAPLP------EPDQIMTLIYTSGSTGQPKGAIQT 186

Query: 200 YRNIGAQLEGHDQRLNLTQEDVSLCFLPLSHVFER-AWTAYVLYKGATNCYLQDVAHVRE 258
           + + G   +   + L     D  L +LPL+H+ ER A      Y G+   +++ +     
Sbjct: 187 FASYGWTCQAVVRDLRTNGNDRLLSYLPLAHITERVAIEGSSFYSGSVVAFVESLDSFVA 246

Query: 259 ALAEVRPTVMCAVPRFYEKIFSAIHEKVVKAPLVRKVLFTWAVNMGAKMAVCRQQQRQPS 318
            +   +PTV  +VPR +      I +K+  + L          N+  K+ +        S
Sbjct: 247 DVQRAKPTVFFSVPRLWSLFQKNIIDKIGVSKL----------NLLLKIPLI-------S 289

Query: 319 WMLKQSHQFADKLVLSKLRALLGGRINFMPCGGAKLDETIGRFFHAIGINVKLGYGMTET 378
            ++K  H+    L L+  R LLG        G A +  ++  ++H+IG+N+   +GMTE 
Sbjct: 290 SLVK--HKIHKGLGLNHCR-LLGS-------GSAPIPPSLIHWYHSIGLNICEAWGMTEN 339

Query: 379 TA-TVSCWDDHCFNPDSIGLSMPGAQVKIGENNEILVRGPMVMRGYYKLDKETTESFDEQ 437
            A ++  +        ++G  +   Q++ GE+ E+L++ P +M  YY   + T  +FD  
Sbjct: 340 CAYSIINYPFDVRKIGTVGKPVQDCQIRQGEDGELLIKSPGLMTAYYLQPEATAAAFDAD 399

Query: 438 GFLKTGDAGHIDENGNLFITDRIKELMKTSGGKYIAPQVIEGAIGKDHFIEQIAVIADTR 497
           GF  TGD   ID +G + IT R+K+  KT+ GKY+AP  IE  + +D  +E I VI    
Sbjct: 400 GFFHTGDLCAIDADGCVTITGRVKDNFKTAKGKYVAPVPIERKLAQDPHVELICVIGSGL 459

Query: 498 KFVSALIVPCFDSLEEYAKELNIKYHDRLELIKHSQVLEMFEKRVNELQKELAKFEQVKK 557
               AL+      L E A            L    +V    +  ++ +   L   E V  
Sbjct: 460 PHPVALV-----QLSEGA-----------NLQAREEVRASLKATLDSVNPHLESHEHVDA 503

Query: 558 FRLLPKAFSMDSGELTPTQKLRRKVINDRYQDEIE 592
             ++ + +S+++  LTPT K++R V+   + + ++
Sbjct: 504 IVVVNEPWSIENDVLTPTLKIKRHVLEKAFSERVD 538