Pairwise Alignments

Query, 601 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 568 a.a., AMP-binding family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  561 bits (1447), Expect = e-164
 Identities = 291/566 (51%), Positives = 382/566 (67%), Gaps = 3/566 (0%)

Query: 33  WQAINWHQFGEQLDELSMALLAQGIGVQDKIAIFSNNMPRWTIADFAALQIRAVTVPIYP 92
           W  ++W  F E   +++  L+  G+ VQD+  I S N P+WT AD   L+ RA+ VPIYP
Sbjct: 5   WHQVSWQAFDEISHKIAQVLIQLGVQVQDRCVILSQNCPQWTCADVGTLKSRAIVVPIYP 64

Query: 93  TNTPEQAAYILQNADVKVVFVGEQAQFDAALSQFEQCPELRLIVAMNANIDLKQASCA-M 151
           T+T EQA++I+ +A  KV+FV +  Q+  A      CP L  ++  +A + L Q      
Sbjct: 65  TSTVEQASFIVNDAAAKVIFVDDAKQYALACELQTLCPTLEHVIVFDAAVQLAQDKPQHK 124

Query: 152 HWDEFVAQSHHQDRAPLDALIEQANYDDLFTLIYTSGTTGTPKGVMLDYRNIGAQLEGHD 211
           H D  +A  + Q  A L+  ++ AN DDL TLIYTSGTTG PKGVMLDYRN+ + +  HD
Sbjct: 125 HLDSLLALEYDQS-AELEQRLKDANLDDLLTLIYTSGTTGDPKGVMLDYRNMASTVHQHD 183

Query: 212 QRLNLTQEDVSLCFLPLSHVFERAWTAYVLYKGATNCYLQDVAHVREALAEVRPTVMCAV 271
             L     DVSL FLPLSHVFER W+ YVL +G  N YLQ+   V+EA++ VRP  +C V
Sbjct: 184 LILPFKTGDVSLAFLPLSHVFERGWSFYVLCRGGRNVYLQNTQRVKEAISAVRPHTLCVV 243

Query: 272 PRFYEKIFSAIHEKVVKAPLVRKVLFTWAVNMGAKMAVCRQQQRQPSWMLKQSHQFADKL 331
           PRF EK++SA+ +KV K+   RK LF WA+ +G +     Q + +    L    + A+KL
Sbjct: 244 PRFLEKVYSAVQDKVAKSAEGRKKLFAWAMGVGERQFEVSQGRVKGGLWLSLQWRLANKL 303

Query: 332 VLSKLRALLGGRINFMPCGGAKLDETIGRFFHAIGINVKLGYGMTETTATVSCWDDHCFN 391
           V SKL+A+LGGR+ FMPCGGA LD  +  FFHAIGI V  GYGMTET ATV+C       
Sbjct: 304 VYSKLQAVLGGRLKFMPCGGAALDLNVASFFHAIGIPVLCGYGMTETNATVTCNTLDNRV 363

Query: 392 PDSIGLSMPGAQVKIGENNEILVRGPMVMRGYYKLDKETTESFDEQGFLKTGDAGHIDEN 451
             S G  +P  Q+K+G+++EILVRG  VMRGYY   ++T  +F E G+LKTGDAG +D +
Sbjct: 364 AGSNGKVLPEIQIKLGKDDEILVRGDTVMRGYYNRPEDTAAAF-EDGWLKTGDAGRLDAH 422

Query: 452 GNLFITDRIKELMKTSGGKYIAPQVIEGAIGKDHFIEQIAVIADTRKFVSALIVPCFDSL 511
           GNLFITDRIKELMKTS GKYIAPQ +EG +G+  FIEQ+AVIAD R +V+ALIVP F+SL
Sbjct: 423 GNLFITDRIKELMKTSNGKYIAPQRVEGTVGRCPFIEQVAVIADARNYVTALIVPAFESL 482

Query: 512 EEYAKELNIKYHDRLELIKHSQVLEMFEKRVNELQKELAKFEQVKKFRLLPKAFSMDSGE 571
           E +AKE  +KY   +EL++HS V+E FE+R+  LQ+ELA FEQ+KKF LLP+AFSM++G 
Sbjct: 483 EAWAKEKGLKYESPIELLRHSHVVEHFEQRLKHLQQELAGFEQIKKFTLLPEAFSMEAGL 542

Query: 572 LTPTQKLRRKVINDRYQDEIEEMYQD 597
           +TPT KLRRK+I  +Y  EI  MY +
Sbjct: 543 ITPTLKLRRKMIYHKYVHEINAMYNN 568