Pairwise Alignments

Query, 601 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  177 bits (449), Expect = 1e-48
 Identities = 157/546 (28%), Positives = 236/546 (43%), Gaps = 72/546 (13%)

Query: 61  DKIAIFSNNMPRWTIADFAALQIRAVTVPIYPTNTPEQAAYILQNADVKVVFVGEQAQFD 120
           DKIA+   N   W IA  A +   A+ VPI    TP    +I+ +++   +F  +     
Sbjct: 57  DKIAVIGKNNAHWCIAYMATITYGAIIVPILQDFTPNDVHHIVNHSESVFLFTSD----- 111

Query: 121 AALSQFEQCPELRLIVAMNANIDLKQASCAMHWDEFVAQS---HHQDRA----PLDALIE 173
              S +E   E +L   +     L    C    D    Q    H  D      P     E
Sbjct: 112 ---SIWESLEEEKL-TGLRGVFSLTDFRCLYQRDGETIQKFLVHLNDEMYAAYPKGFTRE 167

Query: 174 QANY-----DDLFTLIYTSGTTGTPKGVMLDYRNIGAQLEGHDQRLNLTQEDVSLCFLPL 228
              Y     D +  L YTSGTTG  KGVML   N+   +    +   L + D  L FLPL
Sbjct: 168 DIQYTTLSNDKVMLLNYTSGTTGFSKGVMLTGNNLAGNVTFGIRTELLKKGDKVLSFLPL 227

Query: 229 SHVFERAWTAYVLYKGATNCYLQDVAH----VREALAEVRPTVMCAVPRFYEKIFSAIHE 284
           +H +  A+         T+  L         + +A  EV+P ++  VP   EKI+     
Sbjct: 228 AHAYGCAFDFLTATAVGTHVTLLGKTPSPKIIMKAFEEVKPNLIITVPLVIEKIY----- 282

Query: 285 KVVKAPLVRKVLFTWAVNMGAKMAVCRQQQRQPSWMLKQSHQFADKLVLSKLRALLGGRI 344
           K V  PL+ K    WA+N+         Q R+                  KL   LGGR 
Sbjct: 283 KNVIQPLINKKGMKWALNIPLLDTQIYNQIRK------------------KLIDALGGRF 324

Query: 345 NFMPCGGAKLDETIGRFFHAIGINVKLGYGMTETTATVSC--WDDHCFNPDSIGLSMPGA 402
             +  GGA +++ +  FF+ I     +GYGMTE    +S   W++         L +  A
Sbjct: 325 KEIIIGGAAMNQEVEEFFYKIKFPFTIGYGMTECGPLISYAPWNEFILGSSGKVLDIMEA 384

Query: 403 QV----KIGENNEILVRGPMVMRGYYKLDKETTESFDEQGFLKTGDAGHIDENGNLFITD 458
           ++       E  EI VRG  VM GYYK  + T E F E G+L+TGD G +D +GN+FI  
Sbjct: 385 RIYKENPEAETGEIQVRGENVMVGYYKNPEATQEVFTEDGWLRTGDLGTMDASGNIFIRG 444

Query: 459 RIKELMKTSGGKYIAPQVIEGAIGKDHFIEQIAVIADTRKFVSALIVPCFDSLEEYAKEL 518
           R+K ++ +S G+ I P+ +E  +    FI +  VI   +K V AL+   +++L+     L
Sbjct: 445 RLKSMILSSSGQNIFPEELEAKLNNLPFILESLVIERNKKLV-ALVYADYEALD----SL 499

Query: 519 NIKYHDRLELIKHSQVLEMFEKRVNELQKELAKFEQVKKFRLLPKAFSMDSGELTPTQKL 578
            +   D L+ I         ++ +  L   +A +E+V K +L P  F     E TP + +
Sbjct: 500 GLNNPDNLKTI--------MDENLKNLNNNVAAYEKVSKIQLYPTEF-----EKTPKRSI 546

Query: 579 RRKVIN 584
           +R + N
Sbjct: 547 KRYLYN 552