Pairwise Alignments

Query, 601 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 597 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella sp. ANA-3

 Score =  578 bits (1489), Expect = e-169
 Identities = 298/594 (50%), Positives = 402/594 (67%), Gaps = 4/594 (0%)

Query: 6   FHIVKRIRQRIAQGGDNAALK-HKQNGQWQAINWHQFGEQLDELSMALLAQGIGVQDKIA 64
           +H+++ ++Q+     +  AL+  +    W  ++W  F +   +++  L+  G+ VQD+  
Sbjct: 6   YHVIRLLQQQSQSLKEAIALEGFEMAAPWHQVSWQAFDQISHKIAQVLIELGVQVQDRCV 65

Query: 65  IFSNNMPRWTIADFAALQIRAVTVPIYPTNTPEQAAYILQNADVKVVFVGEQAQFDAALS 124
           I S N P+WT AD   L+ RAV VPIYPT+T EQA++I+ +A  KV+FV +  Q+  A  
Sbjct: 66  ILSQNCPQWTCADIGTLKSRAVVVPIYPTSTLEQASFIINDAAAKVIFVDDAKQYALACE 125

Query: 125 QFEQCPELRLIVAMNANIDLKQASCA-MHWDEFVAQSHHQDRAPLDALIEQANYDDLFTL 183
             +QCP L  ++  +A+++L Q      H D  +A+ + Q  A L+  ++ AN DDL TL
Sbjct: 126 LQKQCPTLEHVIVFDASVELAQDKAQHQHLDSLLAKEYGQS-AELEQRLKDANLDDLLTL 184

Query: 184 IYTSGTTGTPKGVMLDYRNIGAQLEGHDQRLNLTQEDVSLCFLPLSHVFERAWTAYVLYK 243
           IYTSGTTG PKGVMLDYRN+ + +  HDQ L  T  DVSL FLPLSHVFER W+ YVL +
Sbjct: 185 IYTSGTTGDPKGVMLDYRNMASTVRQHDQILPFTTGDVSLAFLPLSHVFERGWSFYVLCR 244

Query: 244 GATNCYLQDVAHVREALAEVRPTVMCAVPRFYEKIFSAIHEKVVKAPLVRKVLFTWAVNM 303
           G  N YLQ+   V+EA++ VRP  +C VPRF EK++SA+ +KV K+   RK LF WA+ +
Sbjct: 245 GGHNVYLQNTQRVKEAISAVRPHTLCVVPRFLEKVYSAVQDKVAKSAEGRKKLFAWAMGV 304

Query: 304 GAKMAVCRQQQRQPSWMLKQSHQFADKLVLSKLRALLGGRINFMPCGGAKLDETIGRFFH 363
           G +     Q + +    L    + A KLV SKL+A+LGGR+ FMPCGGA LD  +  FFH
Sbjct: 305 GERQFEVSQGRAKGGLWLSLQWRLAHKLVYSKLQAVLGGRLKFMPCGGAALDLNVASFFH 364

Query: 364 AIGINVKLGYGMTETTATVSCWDDHCFNPDSIGLSMPGAQVKIGENNEILVRGPMVMRGY 423
           AIGI V  GYGMTET ATV+C         S G  +P  +VK+G+++EILVRG  VMRGY
Sbjct: 365 AIGIPVLCGYGMTETNATVTCNTLDNRVAGSNGKVLPEIEVKLGKDDEILVRGDTVMRGY 424

Query: 424 YKLDKETTESFDEQGFLKTGDAGHIDENGNLFITDRIKELMKTSGGKYIAPQVIEGAIGK 483
           Y   ++T  +F E G+LKTGDAG +D NGNLFITDRIKELMKTS GKYIAPQ +EG +G+
Sbjct: 425 YNRPEDTAAAF-EDGWLKTGDAGRLDANGNLFITDRIKELMKTSNGKYIAPQRVEGTVGR 483

Query: 484 DHFIEQIAVIADTRKFVSALIVPCFDSLEEYAKELNIKYHDRLELIKHSQVLEMFEKRVN 543
             FIEQ+AVIAD R +V+ALIVP F+SLE +AK+  +KY   +EL++HS V+E FE+R+ 
Sbjct: 484 CPFIEQVAVIADARNYVTALIVPAFESLEAWAKDKGLKYESPIELLRHSHVVEHFEQRLK 543

Query: 544 ELQKELAKFEQVKKFRLLPKAFSMDSGELTPTQKLRRKVINDRYQDEIEEMYQD 597
            LQ+ELA FEQ+KKF LLP+AFSM++G +TPT KLRRK+I  +Y  EI  MY +
Sbjct: 544 HLQQELAGFEQIKKFTLLPEAFSMEAGLITPTLKLRRKMIYHKYAHEINAMYNN 597