Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 183 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas fluorescens FW300-N2E2

 Score = 80.9 bits (198), Expect = 1e-20
 Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 6/157 (3%)

Query: 30  QNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFRGESAFYTWLYRIAVNTAKNHIVA 89
           + K+   + + V N  D  D+ Q  +++A+R    F+G +   TWL  IA+N  +NH   
Sbjct: 27  ERKLRLFVQKRVLNQDDADDIIQLTYLEAWRNQQKFKGLAKQDTWLCGIALNLIRNHFRR 86

Query: 90  QSRRPPASDVDAEEAEFYEGGDALKELSNPENITLSKELKKTVFDAIDALPDDLKTAMTL 149
              +PP S  D  E+EF E  D +      +N  L   L +T+  A+D LP D++  +  
Sbjct: 87  FYAQPPLSTFD--ESEFSESSDDIDLSELCDNRRL---LDRTLL-AMDELPKDMRDTLWT 140

Query: 150 RELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEKKI 186
                 SY + AE +  P+GTVRSR+FRARE +++ +
Sbjct: 141 AVDTESSYRDAAERLGVPIGTVRSRLFRAREQLKRSV 177