Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 190 a.a., RNA polymerase sigma-E factor from Pseudomonas fluorescens FW300-N2E2

 Score = 64.7 bits (156), Expect = 1e-15
 Identities = 46/180 (25%), Positives = 91/180 (50%), Gaps = 7/180 (3%)

Query: 6   TDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVAD-VAQEAFIKAYRAIPT 64
           +D+ L+ R +NGD  +F +L  R++  +   +   +SN  ++A+ + Q+ ++   R+   
Sbjct: 9   SDESLLARYRNGDGASFEVLYARHRQGLYRFLVS-LSNKAELAEEIFQDTWLSLIRSATQ 67

Query: 65  FRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPENITL 124
            +G ++F TWL++IA N   +H   Q    P  D   E+           E    + ++L
Sbjct: 68  PQGRASFRTWLFQIARNRLIDHWRKQGVHNPLHDSYDEQLHVQPDDTTSPE----QQLSL 123

Query: 125 SKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEK 184
           S++  + +  A+ ALP+D +    LR    L   +IA +   P+ TV+SR+  A++ + +
Sbjct: 124 SRDQAR-LDAALQALPEDQREVFLLRLHGDLELPQIAALTGAPLETVKSRLRYAQQKLHR 182