Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 203 a.a., RNA polymerase sigma factor RpoE from Pseudomonas fluorescens FW300-N2E2

 Score = 66.6 bits (161), Expect = 3e-16
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 11/183 (6%)

Query: 7   DQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFR 66
           D +L++R+  G++QA+  LV  YQ+ +   ++  +  S  V +V Q+A++   R +  F+
Sbjct: 6   DTLLLQRLLAGEQQAYKELVSAYQSPM-RAVAYAIVGSRHVDEVVQDAWLSVVRNLSGFQ 64

Query: 67  GESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEA-----EFYEGGDALK-----EL 116
           G S+  TWL  I  N A+       R     D+ +         F   G  L        
Sbjct: 65  GRSSLKTWLLTITANAARGRYKQNRREVLFDDLPSPHGTLGDDRFAADGHWLLAPFAWHQ 124

Query: 117 SNPENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIF 176
             PE +    EL+  +   + +L +   + + LRE  GL  EEI  ++D  +  VR  + 
Sbjct: 125 DTPEALLTMAELRDCLEHTLLSLSELQGSVLNLRERQGLELEEICNLLDISLSNVRVLLH 184

Query: 177 RAR 179
           RAR
Sbjct: 185 RAR 187