Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 186 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score =  107 bits (266), Expect = 2e-28
 Identities = 63/182 (34%), Positives = 104/182 (57%), Gaps = 10/182 (5%)

Query: 1   MNEQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYR 60
           MNE   +Q LI++   GD+QAF  LV  +Q +V + I R + ++ + AD+ QE FI+AY+
Sbjct: 1   MNE--CEQELIQQAVRGDRQAFGALVRAHQARVFHFIRRLLGSTDEAADLTQETFIRAYQ 58

Query: 61  AIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPE 120
           A+P +R E+   TWL +IA N A + ++ Q +R      D +          L+ L +  
Sbjct: 59  ALPRWRPEARLQTWLLQIARNAALD-LLRQRQRHVVLAADEQAEPIDPAPSPLRRLQSAR 117

Query: 121 NITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRARE 180
           ++ + + L       +  LP + +  + LRE++GLSY+E+A  +    GTV+SR+ RARE
Sbjct: 118 DLEMLERL-------LARLPHEQREILLLREVEGLSYDELAATLQLNAGTVKSRLARARE 170

Query: 181 AV 182
           A+
Sbjct: 171 AL 172