Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 193 a.a., RNA polymerase sigma factor RpoE from Pseudomonas stutzeri RCH2

 Score =  254 bits (650), Expect = 5e-73
 Identities = 124/190 (65%), Positives = 154/190 (81%)

Query: 1   MNEQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYR 60
           M  Q  DQ L+ERVQ GDK+AF+LLV++YQ+K+  LI R+V +S +  DVAQEAFIKAYR
Sbjct: 1   MLTQEQDQQLVERVQRGDKRAFDLLVMKYQHKILGLIVRFVHDSHEAQDVAQEAFIKAYR 60

Query: 61  AIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPE 120
           A+  FRG+SAFYTWLYRIA+NTAKNH+VA+ RRPP SDV +E+AEFYEG  ALK++ +PE
Sbjct: 61  ALANFRGDSAFYTWLYRIAINTAKNHLVARGRRPPDSDVSSEDAEFYEGDHALKDIESPE 120

Query: 121 NITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRARE 180
              L  E++ TV   I  LP+DL+TA+TLRE DGLSYE+IA VM CPVGTVRSRIFRARE
Sbjct: 121 RSLLRDEIEDTVHRTIQLLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRARE 180

Query: 181 AVEKKIKPLL 190
           A++K ++PLL
Sbjct: 181 AIDKALQPLL 190