Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 202 a.a., sigma-70 family RNA polymerase sigma factor from Synechocystis sp000284455 PCC 6803

 Score = 86.7 bits (213), Expect = 3e-22
 Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 16/183 (8%)

Query: 10  LIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFRGES 69
           +I+R Q GD +AF  L  RYQ KV + + + +     + D+ QE F K ++ +P  R  +
Sbjct: 17  MIQRSQQGDAEAFRQLYRRYQAKVRSTLYQ-LCGQHQLDDLVQEVFFKVWKGLPKLRNHN 75

Query: 70  AFYTWLYRIAVNTAKN--HIVAQSR----RPPASDVDAEEAEFYEGGDALKELSNPENI- 122
            F TWLYRI  N A++    + +SR    +P  +  D E       G+   +LS PE+  
Sbjct: 76  FFATWLYRITWNVAQDARKQLGRSRQRIHQPSTALADNE-------GEISLQLSRPEDSP 128

Query: 123 -TLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREA 181
             L    +  V   +  L  + +T + L +L+ L  + IAEV++ P GT++SR+F AR A
Sbjct: 129 DLLQLHYQDLVQQGLATLSFEHRTVLVLHDLEDLPQKTIAEVLNLPGGTIKSRLFYARRA 188

Query: 182 VEK 184
           + +
Sbjct: 189 MRE 191