Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 223 a.a., sigma-70 family RNA polymerase sigma factor from Synechocystis sp000284455 PCC 6803

 Score = 96.7 bits (239), Expect = 3e-25
 Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 2/184 (1%)

Query: 9   VLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFRGE 68
           +L ++    D  AFN L+ RYQ+ V  ++     +  D AD+AQE +I+ YR I      
Sbjct: 38  LLCQQKTRPDSTAFNELLRRYQSHVDKILYHLAPDWQDRADLAQEVWIRVYRNIHRLNEP 97

Query: 69  SAFYTWLYRIAVNTAKNHIVAQSR--RPPASDVDAEEAEFYEGGDALKELSNPENITLSK 126
             F  WL RIA N   + +  + R   P + D      +     D   +  +P+    + 
Sbjct: 98  VKFKGWLSRIATNLFYDELRKRKRVSHPISLDAPRRMDDGEIDWDIESDYPSPDETLSTA 157

Query: 127 ELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEKKI 186
           E  + +  AI  LP+  +T + LRE+DGL+YEEIAE+    +GTV+SRI RAR  ++  +
Sbjct: 158 EFYECLRSAIKDLPEAFRTTIILREIDGLAYEEIAEITGVSLGTVKSRIARARAKLQTFL 217

Query: 187 KPLL 190
           +P L
Sbjct: 218 QPYL 221