Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 218 a.a., RNA polymerase sigma factor RpoE from Synechococcus elongatus PCC 7942

 Score =  101 bits (251), Expect = 1e-26
 Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 8/191 (4%)

Query: 5   LTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPT 64
           L + VL  + Q  D+ AF  LV RYQN V  LI     +  D AD+ QE +I+ YR +  
Sbjct: 28  LDELVLRCQKQPSDRLAFTELVRRYQNHVERLIYHLAPDWEDRADLVQEVWIRVYRNLKN 87

Query: 65  FRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDAL-----KELSNP 119
            +   +F  WL RI  N   + +  + RR PA  +DA       G D L      E + P
Sbjct: 88  LQEPRSFKGWLSRIVTNLFYDELRRRKRRQPALSLDAPR---LIGNDQLDWELPTEQAGP 144

Query: 120 ENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAR 179
           +     +E    +  AI  LP+  +T + LRE++GL+YEEIA      +GTV+SRI RAR
Sbjct: 145 DEELEKQEFYNELRRAIAGLPESFRTTIVLREIEGLAYEEIAAATGVSLGTVKSRIARAR 204

Query: 180 EAVEKKIKPLL 190
           + ++ ++   L
Sbjct: 205 QRLQDQLSGYL 215