Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 184 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 79.3 bits (194), Expect = 4e-20
 Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 22/189 (11%)

Query: 2   NEQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRA 61
           ++ + D  L ++   GDK AF  L  R+  ++  L  R         ++ QE+F++ +  
Sbjct: 13  SQDVNDASLAQQAAQGDKSAFEALYQRHHKRIYALALRLGGEPSLADEILQESFVRLWHK 72

Query: 62  IPTFRGESAFYTWLYRIAVN----TAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELS 117
           +P FRGES F TW Y +A+N    T K H    +R  P   +           DA +   
Sbjct: 73  LPQFRGESQFGTWFYSLALNQALSTLKQHRSFWARMVPDWQIQ----------DAPEHSQ 122

Query: 118 NPENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFR 177
           N + + L +         I  LP+  +    L  ++G S+EE+A ++    GT ++   R
Sbjct: 123 NDDGLLLDR--------LIVRLPERARLVFVLFAVEGFSHEEVASLLGISTGTSKAHYHR 174

Query: 178 AREAVEKKI 186
           ARE +++ +
Sbjct: 175 ARELMKEML 183