Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 198 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 64.7 bits (156), Expect = 1e-15
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 7/177 (3%)

Query: 7   DQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFR 66
           D++L++R  +GD QAF+ L  R++  +     R + +S    D+ QE + +  +A P + 
Sbjct: 15  DELLMQRYASGDIQAFDTLYRRHKGGLYRYFLRQIGDSQLAEDLYQETWGRVIKAAPAYE 74

Query: 67  GESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPENITLSK 126
             + F TWLYRIA N   +H+ A     P ++ D  + E     D++  + + E+    +
Sbjct: 75  ISAKFTTWLYRIAHNLLIDHVRAVK---PLNEADTLDEEGMALTDSMTPVRSHEHDLKVQ 131

Query: 127 ELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVE 183
            LK      +  LP   K A  L    G +   I+E+    +   +SRI  A ++++
Sbjct: 132 ALK----HCVGLLPQVQKEAFLLSSEMGFTALMISEIASVSLEATKSRIRYAYQSLK 184