Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 192 a.a., RNA polymerase sigma factor RpoE (RefSeq) from Shewanella amazonensis SB2B

 Score =  276 bits (705), Expect = 2e-79
 Identities = 131/190 (68%), Positives = 165/190 (86%)

Query: 1   MNEQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYR 60
           M+ Q +DQ L+E VQ GDK AFNLLVLRYQ++V NLISRYV N  DVADVAQEAFIKAYR
Sbjct: 1   MSGQKSDQELVELVQQGDKNAFNLLVLRYQSRVINLISRYVRNQADVADVAQEAFIKAYR 60

Query: 61  AIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPE 120
           A+  FRGESAFYTWLYRIAVNTAKN++V+Q RR PA+DVDA++AE+Y+G DALKE ++PE
Sbjct: 61  ALANFRGESAFYTWLYRIAVNTAKNYLVSQGRRAPANDVDADDAEYYDGSDALKEFASPE 120

Query: 121 NITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRARE 180
            + LS E+K+ VF+ ++ LP++LK A++LRELDG+SYE+IA VM+CPVGTVRSRIFRARE
Sbjct: 121 RLMLSDEIKRVVFETLEELPEELKMAISLRELDGMSYEDIANVMECPVGTVRSRIFRARE 180

Query: 181 AVEKKIKPLL 190
            +++K++PLL
Sbjct: 181 VIDRKLQPLL 190