Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 208 a.a., RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

 Score = 71.2 bits (173), Expect = 1e-17
 Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 12/186 (6%)

Query: 3   EQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAI 62
           E  +D+VL+  V    +QAF +L+ R+  +   L  R V +  +  D+ QEAF++ +   
Sbjct: 25  EHDSDEVLMLAVAERRQQAFRVLMARHMPRAIRLAQRIVRDPAEADDIGQEAFLRVWNKA 84

Query: 63  PTFRGESA-FYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPEN 121
            +F  + A F TWLYRI +N + +    ++R+P  + ++ + AE      A      P  
Sbjct: 85  SSFDPKIARFSTWLYRIVLNLSFD----RTRKPRHAPIE-DAAEVPSADPA------PVE 133

Query: 122 ITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREA 181
             ++ + ++ +  A+  LP+  + A+ L  ++GLS EE A  M+       S + RAR  
Sbjct: 134 ALITAQQQRLLEAALAELPERQRGAIALFHMEGLSGEEAARAMNLSPKAFESLLGRARLT 193

Query: 182 VEKKIK 187
           ++K ++
Sbjct: 194 LKKAVE 199