Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 172 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 70.5 bits (171), Expect = 2e-17
 Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 15/174 (8%)

Query: 18  DKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFRGESAFYTWLYR 77
           D   FN  + +Y+  + +    Y  +  D AD+ Q+ F+KA+R    F   S    WL+ 
Sbjct: 2   DSLNFNCDIYQYRQPLFDRALAYTHDEDDAADLVQDTFMKAFRFSAKFEMGSNVRAWLFT 61

Query: 78  IAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKEL----SNPENITLSKELKKTVF 133
           I  NT  NH     R+           E  +  D L  +    S   N   +K + + + 
Sbjct: 62  ILKNTFLNHYYKVKRK----------NEMIQQEDDLTSVQLAPSASSNGGAAKFMMEDIQ 111

Query: 134 DAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEKKIK 187
            +++ALP+D +     R  +G  Y EIA  +D P+GTV+++I  AR  ++K +K
Sbjct: 112 KSLNALPEDCRFCF-CRYFEGYKYHEIAAELDIPLGTVKTKIHVARGLLKKMLK 164