Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 190 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella loihica PV-4

 Score = 78.6 bits (192), Expect = 6e-20
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 27/188 (14%)

Query: 4   QLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIP 63
           QL D VL++R + GDK AF  L  ++  +V  L  R    +    +  QE F++ ++ +P
Sbjct: 25  QLLDAVLVQRAKQGDKTAFRQLYDQHHRRVYALCFRLAGQTELAEEATQETFVRLWQKLP 84

Query: 64  TFRGESAFYTWLYRIAVNTA----KNHIVAQSRRPPASDVDAEEAEF-YEGGDALKELSN 118
            F G+S F TWL+ + VN A    K H    +R  P+ +  A   +F Y+G D L     
Sbjct: 85  LFDGKSQFTTWLHSLTVNQALSCIKKHKSFWARFMPSEETHAAAIDFDYQGVDKL----- 139

Query: 119 PENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRA 178
                            +  LP+  +    L  L+G  ++EIA+ ++   GT +++  RA
Sbjct: 140 -----------------LLRLPERARIVFVLYALEGYQHDEIAKRLNIAPGTSKAQYHRA 182

Query: 179 REAVEKKI 186
           ++ +++ I
Sbjct: 183 KKLLQEMI 190