Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 192 a.a., RNA polymerase sigma factor RpoE (RefSeq) from Shewanella loihica PV-4

 Score =  292 bits (747), Expect = 3e-84
 Identities = 140/190 (73%), Positives = 168/190 (88%)

Query: 1   MNEQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYR 60
           M+ Q++DQ L+ERVQ GDK AFNLLV +YQ+KV NLI+RYV N  DVADVAQEAFIKAYR
Sbjct: 1   MSGQISDQQLVERVQQGDKNAFNLLVHKYQSKVINLIARYVRNQADVADVAQEAFIKAYR 60

Query: 61  AIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPE 120
           A+P FRGESAFYTWLYRIAVNTAKNH+VAQ RR PA+DVDAEEAE+Y+G DALKE ++PE
Sbjct: 61  ALPNFRGESAFYTWLYRIAVNTAKNHLVAQGRRAPANDVDAEEAEYYDGSDALKEFASPE 120

Query: 121 NITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRARE 180
            + LS E++K VFD +D LP++LK A++LRELDG+SYEEIA VM+CPVGTVRSRIFRARE
Sbjct: 121 RLMLSDEIQKVVFDTLDTLPEELKMAISLRELDGMSYEEIANVMECPVGTVRSRIFRARE 180

Query: 181 AVEKKIKPLL 190
           A++KK++PLL
Sbjct: 181 AIDKKLQPLL 190