Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 199 a.a., RNA polymerase sigma factor RpoE from Dechlorosoma suillum PS

 Score =  249 bits (635), Expect = 3e-71
 Identities = 118/191 (61%), Positives = 161/191 (84%), Gaps = 1/191 (0%)

Query: 1   MNEQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYR 60
           M+E+  DQ L+ER Q+GDK+AF LLV +YQ K+  L+SR++ +  +V DVAQEAFIKAYR
Sbjct: 1   MSEREIDQKLVERAQSGDKKAFELLVAKYQRKLGRLLSRFIRDPAEVEDVAQEAFIKAYR 60

Query: 61  AIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPAS-DVDAEEAEFYEGGDALKELSNP 119
           A+P+FRG+SAFYTWLYRI +NTAKN++VAQ RR P S + D+EEAE ++ G+ L++++ P
Sbjct: 61  ALPSFRGDSAFYTWLYRIGINTAKNYLVAQGRRAPTSTEFDSEEAETFDDGEQLRDINTP 120

Query: 120 ENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAR 179
           EN+ LSK++ +TV  A+DALP++L+TA+ LREL+GLSYEEIA++MDCP+GT+RSRIFRAR
Sbjct: 121 ENLLLSKQIGETVNAAMDALPEELRTAIMLRELEGLSYEEIAKIMDCPIGTIRSRIFRAR 180

Query: 180 EAVEKKIKPLL 190
           EAV  K++PLL
Sbjct: 181 EAVATKLRPLL 191