Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 216 a.a., Alternative RNA polymerase sigma-E factor (sigma-24) SigH (RPOE) from Mycobacterium tuberculosis H37Rv

 Score = 80.5 bits (197), Expect = 2e-20
 Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 12/148 (8%)

Query: 39  RYVSNSGDVADVAQEAFIKAYRAIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRP---P 95
           R   N  D  D+ QE  +KAY    +FR  +    WLYRI  NT  N    + R+P   P
Sbjct: 46  RMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYP 105

Query: 96  ASDVD----AEEAEFYEGGDALKELSNPENITLSKELKKTVFDAIDALPDDLKTAMTLRE 151
              +     A  AE    G    E+   E +    E+K    +A+ ALP++ + A+   +
Sbjct: 106 TEQITDWQLASNAEHSSTGLRSAEVEALEALP-DTEIK----EALQALPEEFRMAVYYAD 160

Query: 152 LDGLSYEEIAEVMDCPVGTVRSRIFRAR 179
           ++G  Y+EIAE+MD P+GTV SR+ R R
Sbjct: 161 VEGFPYKEIAEIMDTPIGTVMSRLHRGR 188