Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 185 a.a., RNA polymerase sigma factor, ECF subfamily, SigC from Mycobacterium tuberculosis H37Rv

 Score = 78.6 bits (192), Expect = 6e-20
 Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 17  GDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFRGESAFYTWLY 76
           G+ +A    +   Q  V   ++ Y+S+ G   D+ QE F++A  AIP F   S+  TWL 
Sbjct: 21  GNGRALEAFIKATQQDVWRFVA-YLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLL 79

Query: 77  RIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPENITLSKELKKTVFDAI 136
            IA +   +HI    R  P +   A      +G    +   +   +T            I
Sbjct: 80  AIARHVVADHI-RHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVTTM----------I 128

Query: 137 DALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEKKIKP 188
             L  D + A+ L +L GLSY + A V  CPVGT+RSR+ RAR+A+    +P
Sbjct: 129 ADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP 180