Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 177 a.a., RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 74.3 bits (181), Expect = 1e-18
 Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 28/192 (14%)

Query: 1   MNEQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYR 60
           +++ +++  L+     G++ AF  L L +  KV  L  R    +    ++ QE FI  ++
Sbjct: 8   LDKAMSEFDLVTLASQGNRAAFKQLYLNHHKKVYALSLRLCGQASQAEEITQECFILVWQ 67

Query: 61  AIPTFRGESAFYTWLYRIAVNTAKNHIVAQSR-----RPPASDVDAEEA-EFYEGGDALK 114
            +P F+GES F TWL+ + VN A + I  Q        P  SD +   + E Y+G D L 
Sbjct: 68  KLPQFKGESQFSTWLHTLCVNQALSFIRKQKSFWARFIPMESDAEHPSSDENYQGLDKL- 126

Query: 115 ELSNPENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSR 174
                                I  LP+  +    L  ++G  +EEIA+++   VGT +++
Sbjct: 127 ---------------------ILKLPERARIVFVLCAIEGYQHEEIAQLLGIAVGTSKTQ 165

Query: 175 IFRAREAVEKKI 186
             RA++ +++ +
Sbjct: 166 YHRAKQLLQEML 177