Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 192 a.a., RNA polymerase sigma-24 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  285 bits (729), Expect = 4e-82
 Identities = 135/190 (71%), Positives = 168/190 (88%)

Query: 1   MNEQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYR 60
           M+ Q++DQ L+ERVQ GDK AFNLLVL+YQ+KV +LISRYV N  DV DVAQEAFIKAYR
Sbjct: 1   MSGQISDQQLVERVQRGDKNAFNLLVLKYQSKVISLISRYVRNQADVTDVAQEAFIKAYR 60

Query: 61  AIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPE 120
           A+P FRGESAFYTWLYRIAVNTAKN++V+Q RR PA+DVDAE+AE+YEG DALKE ++PE
Sbjct: 61  ALPNFRGESAFYTWLYRIAVNTAKNYLVSQGRRAPANDVDAEDAEYYEGSDALKEFASPE 120

Query: 121 NITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRARE 180
            + LS E+KK VF+ ++ LP++L+ A++LRELDG+SYE+IA +MDCPVGTVRSRIFRARE
Sbjct: 121 RLMLSDEIKKVVFETLETLPEELRMAISLRELDGMSYEDIAIIMDCPVGTVRSRIFRARE 180

Query: 181 AVEKKIKPLL 190
           A++KK++PLL
Sbjct: 181 AIDKKLQPLL 190