Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 199 a.a., RNA polymerase sigma factor RpoE from Ralstonia sp. UNC404CL21Col

 Score =  244 bits (622), Expect = 9e-70
 Identities = 114/191 (59%), Positives = 159/191 (83%), Gaps = 1/191 (0%)

Query: 1   MNEQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYR 60
           M+E+  DQ+L+ERVQ GDK+AF LLV++Y  K+  L+SR + +  +V DVAQ+AFIKAYR
Sbjct: 1   MSEREADQILVERVQQGDKRAFELLVVKYHRKIIRLVSRLIRDPAEVEDVAQDAFIKAYR 60

Query: 61  AIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRP-PASDVDAEEAEFYEGGDALKELSNP 119
           A+P FRGESAFYTWLYRIAVNTAKN++  Q RRP  +SD+D EEAE +  G+ L++++ P
Sbjct: 61  ALPQFRGESAFYTWLYRIAVNTAKNYLATQGRRPESSSDIDTEEAETFADGELLRDINTP 120

Query: 120 ENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAR 179
           +++  +K++ +TV  A++ALP++L+TA+TLRE++GLSYEEIAE M+CP+GTVRSRIFRAR
Sbjct: 121 DSMLHTKQVAETVNRAMEALPEELRTAITLREIEGLSYEEIAEAMECPIGTVRSRIFRAR 180

Query: 180 EAVEKKIKPLL 190
           EA+ +K++PLL
Sbjct: 181 EAIAEKLRPLL 191