Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 199 a.a., RNA polymerase sigma-70 factor (ECF subfamily) from Paraburkholderia graminis OAS925

 Score =  241 bits (614), Expect = 8e-69
 Identities = 118/191 (61%), Positives = 153/191 (80%), Gaps = 1/191 (0%)

Query: 1   MNEQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYR 60
           M+E+  DQVL+ERVQ GDK AF LLV +Y  K+  LISR V +  +V DVAQ+AFIKAYR
Sbjct: 1   MSEKEIDQVLVERVQKGDKAAFELLVSKYHRKILRLISRLVRDPAEVEDVAQDAFIKAYR 60

Query: 61  AIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPAS-DVDAEEAEFYEGGDALKELSNP 119
           A+P FRGESAFYTWLYRIAVNTAKN++  Q RR P S + DAEEAE +   D L++++ P
Sbjct: 61  ALPQFRGESAFYTWLYRIAVNTAKNYLATQGRRAPTSTEADAEEAETFSDADQLRDINTP 120

Query: 120 ENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAR 179
           E++ +SK++ +TV  A+  LP++L+TA+TLRE++GLSYEEIAE+M CP+GTVRSRIFRAR
Sbjct: 121 ESMLMSKQIAETVNAAMAVLPEELRTAITLREIEGLSYEEIAEMMGCPIGTVRSRIFRAR 180

Query: 180 EAVEKKIKPLL 190
           EA+  K++PLL
Sbjct: 181 EAIAAKLRPLL 191