Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 186 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 80.5 bits (197), Expect = 2e-20
 Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 8/183 (4%)

Query: 8   QVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFRG 67
           Q L+ R Q  DK+AF LLV  +Q  V  L  R + +  +  D+ QE F+K + ++ T+  
Sbjct: 7   QELVSRSQQDDKRAFALLVSEFQPLVFRLAFRLLCDEEEARDITQETFVKVWLSLKTYNQ 66

Query: 68  ESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALK-ELSNPENITLSK 126
           E+   TWLY+I  NT  + + +    P  ++    ++      D ++  LSN       K
Sbjct: 67  ENRLSTWLYKITCNTCYDRLRSLRHSPLDNESAFSDSVNIPSDDHIEISLSN-------K 119

Query: 127 ELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEKKI 186
           +LK+ +    + LP   K   TLR+++ L   E+  +       ++S ++ AR+ +  K+
Sbjct: 120 QLKELILRYTNELPPQQKLVFTLRDVEELEVAEVQIITGLSPEKIKSTLYLARKNIRNKM 179

Query: 187 KPL 189
             +
Sbjct: 180 NQI 182