Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 183 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 70.5 bits (171), Expect = 2e-17
 Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 22/177 (12%)

Query: 15  QNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFRGESAFYTW 74
           ++  ++ F L+V +Y  ++   I R V +  D  D+ Q  FIKA+  I  FR E+   TW
Sbjct: 16  ESTQRKGFELIVAQYSEQLYWQIRRMVLSHEDANDLLQNTFIKAWTNIDYFRAEAKLSTW 75

Query: 75  LYRIAVNTAKNHIVAQSRR-------PPASDVDAEEAEFYEGGDALKELSNPENITLSKE 127
           LYRIA+N     +  Q          P A+ V   E++ Y  GD ++ L           
Sbjct: 76  LYRIALNECLTFLNRQRATTTVAIDDPEAAIVQKLESDPYYSGDQVQML----------- 124

Query: 128 LKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEK 184
           L+K    A+  LP+  +    L+    + YEE++E+    VG +++    A + +EK
Sbjct: 125 LQK----ALLTLPEKQRMVFNLKYYQEMKYEEMSEIFGTSVGALKASYHHAVKKIEK 177