Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 77.4 bits (189), Expect = 1e-19
 Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 20/188 (10%)

Query: 4   QLTDQVLIERVQN-GDKQAFNLLVLRYQNKVCNLISRYVSNSGDVAD-VAQEAFIKAYRA 61
           QL D  L+ +V    + +AF+ LV +YQ+ V            +++D +AQ+ FIKAY  
Sbjct: 3   QLNDISLVAQVVVFKNTRAFDQLVQKYQSPVRRFFLHLTCGDSELSDDLAQDTFIKAYTN 62

Query: 62  IPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPEN 121
           + +FR  S+F TWLYRIA N   ++I  +SR+  A D+D  E       DA+       N
Sbjct: 63  LASFRNLSSFSTWLYRIAYNIFYDYI--RSRKEMA-DLDTREV------DAV-------N 106

Query: 122 ITLSKELKKT--VFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAR 179
            T    + +T  V+ ++ +L +  +T +TL  ++ +S ++IA +   P GTV+S + R +
Sbjct: 107 CTEQANIGQTMDVYQSLKSLKEVERTCITLFYMEDVSIDKIAGITGIPAGTVKSHLSRGK 166

Query: 180 EAVEKKIK 187
           E +   +K
Sbjct: 167 EKLATYLK 174