Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 78.6 bits (192), Expect = 6e-20
 Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 6/180 (3%)

Query: 3   EQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAI 62
           EQ  +   IER+ +G+ + F++ + RY   +  L+ + V    D  ++ Q+ F+KA+R +
Sbjct: 2   EQKDESYYIERILDGETEYFSVFLDRYSRPLYTLVVQIVGCPEDAEELLQDIFLKAFRNL 61

Query: 63  PTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPENI 122
             ++GE  F TW+YRIA N A    ++ +R+     +  EE       D + +  N    
Sbjct: 62  NRYKGECRFSTWIYRIAYNAA----ISATRKKKQEFLYIEENTINNVPDEMAD--NVLAP 115

Query: 123 TLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAV 182
             ++E  + +  AID L  + K  +TL   +  S EEI EV+   +  V+ R+ R R+ +
Sbjct: 116 AETEEQLERLEMAIDQLSGEEKALITLFYYEEKSMEEIGEVLKLSISNVKVRLHRTRKKI 175