Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 177 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

 Score = 77.4 bits (189), Expect = 1e-19
 Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 28/192 (14%)

Query: 1   MNEQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYR 60
           +N  +++  LI     G++ AF  L L +  +V  L  R    +    ++ QE FI  ++
Sbjct: 8   LNNAMSELDLITLASQGNRAAFKQLYLHHHPRVYALSLRLSGQASQAEEITQECFILVWQ 67

Query: 61  AIPTFRGESAFYTWLYRIAVNTAKNHIVAQSR-----RPPASDVDAEEA-EFYEGGDALK 114
            +P FRGES F TWL+ I VN A + I  Q        P  SD +   A E Y+G D L 
Sbjct: 68  KLPQFRGESQFSTWLHSICVNQALSFIRKQKSFWARFIPMESDDEHSSADEHYQGLDKL- 126

Query: 115 ELSNPENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSR 174
                                I  LP+  +    L  ++G  +EEIA+++   VGT +++
Sbjct: 127 ---------------------ILRLPERARIVFVLCAIEGYQHEEIAQLLGIAVGTSKTQ 165

Query: 175 IFRAREAVEKKI 186
             RA++ +++ +
Sbjct: 166 YHRAKQLLQEML 177