Pairwise Alignments

Query, 212 a.a., sigma-E factor negative regulatory protein RseA from Vibrio cholerae E7946 ATCC 55056

Subject, 216 a.a., anti-RNA polymerase sigma factor SigE from Klebsiella michiganensis M5al

 Score =  153 bits (386), Expect = 3e-42
 Identities = 93/198 (46%), Positives = 123/198 (62%), Gaps = 20/198 (10%)

Query: 10  KEKLSALMDGEMIDNELILGLAQDQDARDTWKNYHLIGDVLRGEAPIHKEWNIAESVALA 69
           KEKLSALMDGE +DNEL+  L +  + + TW++YHLI D LRG+      ++I+  V  A
Sbjct: 3   KEKLSALMDGETLDNELLNELERSSEMQKTWESYHLIRDSLRGDTSEVLHFDISARVMAA 62

Query: 70  LENEPAHNPLHHSTNVIDLQQARLEAQPKPQQAKRQLP------AWLSQFGQVGIAACVS 123
           +ENE    P+  +  +I       E+QP P Q  RQ+P       W S   Q+G+AACVS
Sbjct: 63  IENE----PVRQTVPLIP------ESQPAPHQ-WRQMPFWQKVRPWASSLTQMGVAACVS 111

Query: 124 LAVIFGVQQYGGQS-SGVENELPVLQTIPLAGSAEPVSL--TRDSVEKHAPDSSMQEQRR 180
           LAVI GVQQY GQS S  + E PV  T+P+ G A PVSL    ++       + +QEQRR
Sbjct: 112 LAVIVGVQQYNGQSDSSQQPEAPVFNTMPMMGKASPVSLGVPAEASAGSGQQAQVQEQRR 171

Query: 181 RVNALLQDYELQLRLNSE 198
           R+NA+LQDYELQ RL++E
Sbjct: 172 RINAMLQDYELQRRLHAE 189