Pairwise Alignments

Query, 321 a.a., sigma-E factor regulatory protein RseB from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., Sigma factor RpoE negative regulatory protein RseB precursor from Pseudomonas fluorescens FW300-N2E2

 Score =  102 bits (253), Expect = 2e-26
 Identities = 78/303 (25%), Positives = 144/303 (47%), Gaps = 26/303 (8%)

Query: 21  AEEESAEALLYQMNEASQHLNYELSYILVKKNSIEPLLYRHARQDDQQLAHLVYLSGPVR 80
           A  + A+  L ++++A Q  +++ +++  +  S       H  QD +    L+ L G  +
Sbjct: 19  AHADEAQDWLNRLSQAEQQQSFQGTFVYERNGSFSTHNIWHRVQDGKVRERLLQLDGSAQ 78

Query: 81  EVIRRGDEVSYIEPGVEPFTIESGNMVA-----PTIPMLNTDVAELSRYYDFVKVGRARE 135
           EV+R       +          SG+++A     P       D  +L  +YD   +G++R 
Sbjct: 79  EVLRIDGHTQCV----------SGSLIAGLGNTPDGTSRALDPQKLKNWYDLAVIGKSRV 128

Query: 136 AGAACQVLRVVPKDGLRYSYVVWVDEKSHLPLRADLLDRDGEVLEQYRTISFSVSERL-A 194
           AG    ++ + PKD  RY + + +D+++ LPL++ LL+  G++LE+++    +V+     
Sbjct: 129 AGRQAVIVAMTPKDQHRYGFELHLDKETGLPLKSLLLNDKGQLLERFQFTRLNVAAPTDG 188

Query: 195 EIMAGLNKVQLPEVLKLPKGSVQETFWQVTWVPDGFQAMELNRYRMAMTERLVESQMYSD 254
           ++ A      + +     K    +  W   W+P GF+       +   T+  V S MY D
Sbjct: 189 DLQASAECKAVTQ--DSAKVVAVKAAWHSDWLPPGFELSSSAVRKDPDTQVQVNSLMYDD 246

Query: 255 GLFNFSVYV------SASDNYSLKGQLVRQGRRTLHSVVKGENEISVVGDIPPATAQRIA 308
           GL  FSV++      +A+D  +  G      RR   +  +GE  ++VVG+IP  TA+RIA
Sbjct: 247 GLARFSVFLEPLNGANATDTRTQLGPTAAVSRRL--TTPQGEMMVTVVGEIPIGTAERIA 304

Query: 309 QSV 311
            S+
Sbjct: 305 LSM 307