Pairwise Alignments

Query, 321 a.a., sigma-E factor regulatory protein RseB from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., RNA polymerase subunit sigma from Pseudomonas fluorescens FW300-N2C3

 Score =  104 bits (260), Expect = 2e-27
 Identities = 80/304 (26%), Positives = 146/304 (48%), Gaps = 28/304 (9%)

Query: 21  AEEESAEALLYQMNEASQHLNYELSYILVKKNSIEPLLYRHARQDDQQLAHLVYLSGPVR 80
           A  + A+  L ++++A Q  +++ +++  +  S       H  QD +    L+ L G  +
Sbjct: 19  AHADEAQDWLSRLSQAEQQQSFQGTFVYERNGSFSTHNIWHRVQDGKVRERLLQLDGSAQ 78

Query: 81  EVIRRGDEVSYIEPGVEPFTIESGNMVA-----PTIPMLNTDVAELSRYYDFVKVGRARE 135
           EV+R       +          SG+++A     P       D  +L  +YD   +G++R 
Sbjct: 79  EVLRIDGHTQCV----------SGSLIAGLGNTPDGTSRALDPQKLKNWYDLAVIGKSRV 128

Query: 136 AGAACQVLRVVPKDGLRYSYVVWVDEKSHLPLRADLLDRDGEVLEQYRTISFSVSERL-A 194
           AG    ++ + PKD  RY + + +D+++ LPL++ LL+  G++LE+++    +V+     
Sbjct: 129 AGRQAVIVALTPKDQHRYGFELHLDKETGLPLKSLLLNDKGQLLERFQFTRLNVAVPTDG 188

Query: 195 EIMAGLNKVQLPEVLKLP-KGSVQETFWQVTWVPDGFQAMELNRYRMAMTERLVESQMYS 253
           ++ A     +   V + P K    +  W   W+P GF+       +   T+  V S MY 
Sbjct: 189 DLQA---SAECKAVAQEPGKAVAVKAAWHSDWLPPGFELTSSAMRKDPDTQIQVSSLMYD 245

Query: 254 DGLFNFSVYV------SASDNYSLKGQLVRQGRRTLHSVVKGENEISVVGDIPPATAQRI 307
           DGL  FSV++      +A+D  +  G      RR   +  +GE  ++VVG+IP  TA+RI
Sbjct: 246 DGLARFSVFLEPLNGANATDTRTQLGPTAAVSRRL--TTPQGEMMVTVVGEIPIGTAERI 303

Query: 308 AQSV 311
           A S+
Sbjct: 304 ALSM 307