Pairwise Alignments

Query, 321 a.a., sigma-E factor regulatory protein RseB from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., putative sigma E regulatory protein, MucB/RseB (RefSeq) from Shewanella amazonensis SB2B

 Score =  159 bits (401), Expect = 1e-43
 Identities = 94/292 (32%), Positives = 159/292 (54%), Gaps = 3/292 (1%)

Query: 21  AEEESAEALLYQMNEASQHLNYELSYILVKKNSIEPLLYRHARQDDQQLAHLVYLSGPVR 80
           A++ SA+A L +M+ A     +++S I ++ + I PL+Y H + + Q++A L +L+GP++
Sbjct: 17  AQDLSAKAWLEEMSRALNQEQFKMSVIHLQADHIRPLVYLHGKVNGQEVAFLEHLNGPIK 76

Query: 81  EVIRRGDEVSYIEPGVEPFTIESGNMVAPTIPMLNTDVAELSRYYDFVKVGRAREAGAAC 140
             +R  + V++IE     FT+ +  +      +   D A +   Y FV  GR+R AG   
Sbjct: 77  NAVRIDNRVTFIEHDQPAFTVNADRIQGLWPAVFANDPAGIEAGYQFVLGGRSRIAGRPG 136

Query: 141 QVLRVVPKDGLRYSYVVWVDEKSHLPLRADLLDRDGEVLEQYRTISFSVSERLAEIMAGL 200
           Q++R +P D  RY   VWVD +++LPLR +LL  + E+LEQ   +   V E  A ++   
Sbjct: 137 QLVRFIPNDPHRYPLQVWVDMETYLPLRYELLTDEKELLEQIMVVELLVLEEPAPLLVEA 196

Query: 201 NKVQLPEVL-KLPKGSVQETFWQVTWVPDGFQAMELNRYRMAMTERLVESQMYSDGLFNF 259
            K   P V+ +L +   Q   W  TW+P+GF+ +  + +R+  ++  VE    +DG+ N 
Sbjct: 197 AKQDWPPVINQLDRHDGQN--WTFTWLPEGFKVVARDHHRLMGSQEPVEYVAITDGIANI 254

Query: 260 SVYVSASDNYSLKGQLVRQGRRTLHSVVKGENEISVVGDIPPATAQRIAQSV 311
           SVYV  + N  +  +L+ +    L S   G  E+  VG +P AT  RI +S+
Sbjct: 255 SVYVGRAGNVPMPDELLTRNGLGLVSEKVGNAEVVAVGRVPMATLSRIIRSL 306