Pairwise Alignments

Query, 321 a.a., sigma-E factor regulatory protein RseB from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., sigma E regulatory protein, MucB/RseB (RefSeq) from Shewanella loihica PV-4

 Score =  170 bits (430), Expect = 5e-47
 Identities = 95/290 (32%), Positives = 161/290 (55%), Gaps = 1/290 (0%)

Query: 22  EEESAEALLYQMNEASQHLNYELSYILVKKNSIEPLLYRHARQDDQQLAHLVYLSGPVRE 81
           EE SA+A L  M+ A +   +++S I ++ + I PL+Y H + DD ++A L +L+GP + 
Sbjct: 19  EELSAKAWLENMSLALKGQEFKMSLIHLQADHIRPLVYLHGKVDDHEVAFLEHLNGPPKN 78

Query: 82  VIRRGDEVSYIEPGVEPFTIESGNMVAPTIPMLNTDVAELSRYYDFVKVGRAREAGAACQ 141
            +R G+ V++IE     +++ +  +     P     +++L   Y FV  GR+R AG   Q
Sbjct: 79  AVRVGNTVTFIEHDQPAYSVRAERIQGVLPPAFAGVISDLESGYQFVLGGRSRLAGRPSQ 138

Query: 142 VLRVVPKDGLRYSYVVWVDEKSHLPLRADLLDRDGEVLEQYRTISFSVSERLAEIMAGLN 201
           ++R++P D  RYSY VW+D  ++LPLR D+L+ + ++LEQ   +   V +    I+    
Sbjct: 139 LVRIIPNDDNRYSYQVWLDMDTYLPLRYDMLNLEKQLLEQVLVVELIVLDDAPAILREAY 198

Query: 202 KVQLPEVLKLPKGSVQETFWQVTWVPDGFQAMELNRYRMAMTERLVESQMYSDGLFNFSV 261
           K   PE++  P+   Q   WQ  W+P GF+ +  + +R+  +   VE    SDGL N SV
Sbjct: 199 KQDWPEIMPQPQRE-QADNWQFKWLPQGFKILVKDNHRLIGSHEAVEYIALSDGLVNISV 257

Query: 262 YVSASDNYSLKGQLVRQGRRTLHSVVKGENEISVVGDIPPATAQRIAQSV 311
           YV+ +   +L  +L+ +   +L +   G  E+  VG +P  T  RIA+S+
Sbjct: 258 YVARAGETALPDELMTRNGLSLAAERVGNAEVVAVGKVPAETLSRIAKSI 307