Pairwise Alignments

Query, 156 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 157 a.a., sigma-E factor regulatory protein RseC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 94.0 bits (232), Expect = 1e-24
 Identities = 58/150 (38%), Positives = 89/150 (59%), Gaps = 8/150 (5%)

Query: 8   VTKVVPAQQGFQVTLSCEQQTSCSSCQSSKSCGTGIVSKAFGNKTLFWRLQTTQALEAGE 67
           V +VV       +T+  E +++C SC SS+SCGT  V++AF +KT  + +Q+ +  E GE
Sbjct: 5   VARVVACDNQGWLTVEVELKSTCKSCNSSESCGTSAVAQAFSSKTQQFSIQSERTCEVGE 64

Query: 68  VVEIGLPEKSVLQSAALVYLLPLFFMMLGAWLGDQWLAPMLGFGEGIVILTALLFIALG- 126
           ++++GLPE  +L++AALVYL+PL  + LGA L  Q+ A +         L+A+ F ALG 
Sbjct: 65  LLKLGLPESVILKAAALVYLMPLLGLFLGA-LSGQFFAGLFQINAD---LSAIGFAALGA 120

Query: 127 --VW-VAKHYAKVLELRSQQQVVLLRKLGI 153
              W + K  AK LE+ SQ  ++     GI
Sbjct: 121 ITAWLIGKRKAKQLEVDSQPVILAYLGAGI 150