Pairwise Alignments

Query, 597 a.a., elongation factor 4 from Vibrio cholerae E7946 ATCC 55056

Subject, 603 a.a., virulence regulator BipA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  162 bits (409), Expect = 5e-44
 Identities = 143/502 (28%), Positives = 230/502 (45%), Gaps = 64/502 (12%)

Query: 1   MKHIRNFSIIAHIDHGKSTLSDRLIQVCGGLSDR-EMAEQVLDSMDLERERGITIKAQSV 59
           ++++RN +IIAH+DHGK+TL D+L+   G L+ R E  E+V+DS DLE+ERGITI A++ 
Sbjct: 2   LENLRNIAIIAHVDHGKTTLVDKLLSQSGTLATRGEATERVMDSNDLEKERGITILAKNT 61

Query: 60  TLDYTAKDGQTYQLNFIDTPGHVDFAYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTA 119
            + +       Y++N +DTPGH DF  EV R L+  +  LL+VDA  G   QT      A
Sbjct: 62  AIKWN-----DYRINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVDGPMPQTRFVTKKA 116

Query: 120 IEMDLEVVPILNKIDLPAAEPERVAEEIEDIV-GIDAID------AVRCSAKTGVG---- 168
               L+ + ++NKID P A P+ V +++ D+   + A D       V  SA  G      
Sbjct: 117 FAQGLKPIVVINKIDRPGARPDWVIDQVFDLFDNLGATDEQLDFPIVYASALNGFATLDP 176

Query: 169 ------VDEVLEKIVSAIPAPQGDPDAPLQALIIDSWFDNYLGVVSLVRIKNGSLKKNDK 222
                 +  + + IV  + +P  D D P Q  I    +++Y+GV+ + RI  GS+K N +
Sbjct: 177 DVVSEDMTPLFQTIVEKVSSPDADADGPFQMQISQLDYNSYVGVIGVGRINRGSIKTNQQ 236

Query: 223 IKVMSTGQTWGVDRLG-IFTPKQVDTDSLDTGEVGWVVCGIKDIMGAPVGDTLTLAKNGC 281
           + V+         ++G +     ++   +D    G +V  I  +    + DT+  A N  
Sbjct: 237 VSVIGADGKVRNGKMGQVLGYMGLERTEVDVANAGDIV-AITGLGELKISDTVCAAGN-- 293

Query: 282 EKALPGFKKVKP------QVYAGLFPVSSDDYDNFRDALGKLS---LNDASLFYEPETSA 332
            +A+P     +P      QV    F      Y   R+ L +L    +++ +L  E   S 
Sbjct: 294 VEAMPPLSVDEPTLTMTFQVNTSPFAGKEGKYVTSRNILERLQQELVHNVALRVEETDSP 353

Query: 333 ALGFGFRCGFLGMLHMEIIQERLEREYDLDLITTAPTVVYEVLKTNKEIVYVDSPAKLPA 392
                F     G LH+ I+ E + RE   +L  + P V   +LKT      +D       
Sbjct: 354 D---RFAVSGRGELHLSILIENMRRE-GYELAVSRPEV---ILKT------IDG------ 394

Query: 393 INDIEEIREPIARCNILVPADYLGNVITLCIEKRGTQVDMVYHG-NQVALTYDIPMAEVV 451
                E+ EP     + V  ++ G VI     ++    DM   G  +V + + IP   ++
Sbjct: 395 -----ELCEPFETLTVDVEEEHQGTVIEKLGIRKAEMKDMQLDGKGRVRVDFVIPSRGLI 449

Query: 452 ---LDFFDRLKSTSRGYASLDY 470
               +F      T   Y S D+
Sbjct: 450 GFQTEFLTATSGTGLIYHSFDH 471