Pairwise Alignments

Query, 225 a.a., ribonuclease 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 247 a.a., RNAse III from Synechococcus elongatus PCC 7942

 Score = 89.4 bits (220), Expect = 6e-23
 Identities = 77/228 (33%), Positives = 115/228 (50%), Gaps = 17/228 (7%)

Query: 5   MNKLTSKLGYTFK---ETELLNLALTHRSANGKHNERLEFLGDSILSFVIADELYRRFPK 61
           + +L +KL  T     + + ++ ALTH SA   H +RLEFLGD++L   IAD L R +P 
Sbjct: 20  LQRLLTKLPLTIAPELDWQQIDRALTHPSAAEDHYDRLEFLGDAVLRLAIADFLDRHYPD 79

Query: 62  VNEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGA 121
           ++ GD S +R+ L    TLA +   ++L   L++G          + S LA+A EA++GA
Sbjct: 80  LSVGDCSALRSELGSDRTLAAIAASYNLERVLRVGKTAANDRA-GQQSRLAEAFEALLGA 138

Query: 122 IYLDS-DLETARSIVLEWYHGRLEEIKPGASQKDP-----KTRLQEFLQGRRKPLPVYTV 175
           +YL   +L+  RS    W    L++ +  A  +DP     K  LQE+   R + LP Y  
Sbjct: 139 LYLSQRNLDPIRS----WLDPHLQQ-RATAMLQDPTRGNYKAALQEWTLQRYQELPEYR- 192

Query: 176 TNIKGEAHNQEFTVACEVAGMDTPV-IGKGTSRRKAEQAAAETALEQL 222
           T  + +A       A EV      +  G G S + A+QAAA  A   L
Sbjct: 193 TEQRSDACGDPAAFAAEVWFRGEKLGSGVGRSIKAAQQAAALVACTAL 240