Pairwise Alignments

Query, 445 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., topoisomerase IV, subunit B (RefSeq) from Shewanella amazonensis SB2B

 Score = 56.6 bits (135), Expect = 1e-12
 Identities = 82/394 (20%), Positives = 150/394 (38%), Gaps = 38/394 (9%)

Query: 27  RLMSGVVGLLAMTSGAALAADWSVSGYGSI--GYSYENEENLGFLRNIAQPDDYQRNGSF 84
           R+ +    + A+ +  A  A+  ++G+ SI  G S +++E+L           Y     F
Sbjct: 2   RISTVAATIAALMATPAAWAEIQINGFASIVAGSSLDDDESLF---------GYDSEIDF 52

Query: 85  KPDSNIGVQFDLQLDPQWSVTTQWVMKERVEQRFDDITELAFVRYTPDENWDIRLGRLGL 144
             ++   VQ    L      T Q + + R +  +D   E A++ Y   +N  +  GR   
Sbjct: 53  NQNTKFAVQVAADLGGGLRATAQLLSRGRDD--YDVEFEWAYLSYDITDNLMLMAGRQRF 110

Query: 145 NAYIAADSRRIDYAHLWLRPPQEFYGGIFYDAIDGIDVTYRSQWDEITWSLGAQYGRIKQ 204
           N Y  +D   + +A+ W+ PPQ  Y  + + + +GI + Y + W +    +G  Y  I  
Sbjct: 111 NLYKYSDYIDVGFAYHWIMPPQGVY-SLPFSSGEGIGLVYSTLWGDT--DVGVTYKYITS 167

Query: 205 KLQNTASSEISATQS-----DQTLALVFSLEQDRWFGRLSYVHVGQLKVDLDGNSLLGIQ 259
             ++   S    T +        L L F+     +   L YV      +  +   LL + 
Sbjct: 168 SKEDFVPSGTDITPAPFSAKGHILNLNFTTGDFEYGLNLGYVS----DLTYEYPDLLALA 223

Query: 260 VVNQLAQAGLGPISAEAAQLVEQINLQEETIEYWQLGFGYRGEQWSLQSEIYTILGEKAV 319
               +   GL P      Q V  I   +++     +   Y    W + +E   +  + + 
Sbjct: 224 AA--VESTGLFP-----EQTVNDILPIDDSATIIGVHGKYDPGNWFILAEYTRLDLDPSA 276

Query: 320 VPEGVGGYAIAGYTLGNVTPYVIYGRFNPKNAPYQAQSDW-----GLSPVNGAQLAEVQK 374
                  +   G   G VT +  YG ++     Y+A          L P    Q+A +  
Sbjct: 277 FALQDSAFVSGGIRFGAVTLHATYG-WDENKPQYEALDAMLPVYNALPPAAQPQVAPLIG 335

Query: 375 WLIGGINSTYIDQQTFSLGVRWDVTAQIALKAQY 408
                + +   D   ++LG+RWD  +  A K +Y
Sbjct: 336 LTQMALETQQQDSYYYTLGMRWDFHSSAAFKVEY 369