Pairwise Alignments

Query, 430 a.a., sensor domain-containing diguanylate cyclase from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  121 bits (303), Expect = 8e-32
 Identities = 107/429 (24%), Positives = 188/429 (43%), Gaps = 45/429 (10%)

Query: 6   RTSPLVNRLLKMISLCALGYLLIILAIIIPRGIQSVEQQKQELEEKLALSLSNSAAIALY 65
           R   L  +   ++   AL + + I  + I   + S +QQ    +++L  S+   AA A++
Sbjct: 4   RFKSLTWKQTNLVVFTALFFAIAIFIVEIALVVVSTKQQLTTTQQELLDSVEQPAANAVW 63

Query: 66  VNNYDIASEVMDALLLHQEINAVKLASVDGIVFERTTIPSTYKEQNYWSDANR------- 118
             + ++A + ++  +  + + +  +   DG +F   +       Q + S +N+       
Sbjct: 64  ALDDNLARQTLEGAIKVEHVGSAVIELDDGSMFVSVSNNRANNSQTFISLSNQLFDDLKE 123

Query: 119 --------YRLDSPVDGNLIGYLMIHEDHQVIRQQAINQILDQIAVVLIQFLVTFIALIW 170
                   +  +      LIG L I  D Q +     +Q+       L + L+  + L  
Sbjct: 124 ISRPLYRPFYFEGTQKQQLIGTLTIFYDTQELTNTLFSQLRFSFFATLARALLLTLVLTV 183

Query: 171 IVRRLVGKPLTDLSQALSEVRPDHDRKVAVAAEDHH--NEIGLVAKSINEFIDASHQALL 228
           +  R + +P+  +S+A+ ++ PD   +  +   + H  +E+GLV    N+ +        
Sbjct: 184 VFHRFLTQPIARISEAIDKIEPDSPDENLLPMSNAHKDDELGLVTSKFNQILI------- 236

Query: 229 RERELRQQIERWESYYRTIAEQDTLTGLKNR-LGCEKFVLRKQRAST---TMVLLLIDLD 284
                  Q  + +S  R +A +D LTGL NR L  E   +  QR+     +  L+ IDLD
Sbjct: 237 -------QFSQTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVHKRSFALMFIDLD 289

Query: 285 GFKQVNDTLGHAAGDEVLREIAKRFYALAQTHFSDFVVGRLGGDEFAIY---IPLDEFVA 341
            FK +ND+LGHA GD+ L  IA+    +     S   V RLGGDEF I    +   +  A
Sbjct: 290 RFKNINDSLGHALGDQFLARIARILERVVGDKGS---VSRLGGDEFVILADSVHSPDQAA 346

Query: 342 ESIERFAAQLIESSSEPIGLGQQSAQVGCSIGISHMNSLHIDLEKLLLQADKAMYWVKYR 401
           + +++   QL    + PI L + +     SIGIS         E L+  AD AMY  K  
Sbjct: 347 DFVDKLLVQL----NVPIQLNEHAIHPAASIGISIYPEDGSSAEDLIRHADIAMYSAKAA 402

Query: 402 GKHGYHIYR 410
           G + +  ++
Sbjct: 403 GSNQWAFFK 411