Pairwise Alignments

Query, 430 a.a., sensor domain-containing diguanylate cyclase from Vibrio cholerae E7946 ATCC 55056

Subject, 1077 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  101 bits (251), Expect = 1e-25
 Identities = 73/212 (34%), Positives = 113/212 (53%), Gaps = 24/212 (11%)

Query: 207 NEIGLVAKSINEFIDASHQALLRERELRQQIERWESYYRTIAEQDTLTGLKNR-LGCEKF 265
           NE G + + I  F+D S          R+Q E+ + +Y+  A  DTLTGL NR L  E+ 
Sbjct: 604 NERGEIIQHIGLFMDISK---------RKQYEQ-DLWYQ--AHFDTLTGLPNRKLFNERL 651

Query: 266 ---VLRKQRASTTMVLLLIDLDGFKQVNDTLGHAAGDEVLREIAKRFYALAQTHFSDFVV 322
              +   Q  S  + +LLIDLD FK +ND  GHA GD +L+++AKR   +A     + ++
Sbjct: 652 QHEIQLAQHDSRKLAILLIDLDQFKYINDVQGHATGDLLLQDVAKRLENIAG---KNDLI 708

Query: 323 GRLGGDEFAIYIP--LDEFVAESIERFAAQLIESSSEPIGLGQQSAQVGCSIGISHMNSL 380
            R+GGDEF + +P   +EF   +IE  A+++IE+ S P  L ++  Q+  S GI      
Sbjct: 709 ARIGGDEFVLILPRVTNEF---AIEHMASRIIETLSTPFNLNEREIQISASFGIGVYPED 765

Query: 381 HIDLEKLLLQADKAMYWVKYRGKHGYHIYRMG 412
            +D+  L    + AMY  K  G++ +  +  G
Sbjct: 766 GLDVSSLTRNTEMAMYQAKDAGRNNFKYFTSG 797