Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 633 a.a., Sensor histidine kinase/response regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  248 bits (633), Expect = 9e-70
 Identities = 178/580 (30%), Positives = 288/580 (49%), Gaps = 58/580 (10%)

Query: 1   MTQRYGLRARVMTLTLAPTLIIGLLLSALFSFNRYHDLETQVINSGASIIEPLAIASEDA 60
           + +R+ +  R   + L P L++ +LL + F+F R  DL  ++ ++G  I   LA A+E  
Sbjct: 3   LRRRWDINTRTQLIALGPALLLTVLLISFFTFVRIQDLRQELNHTGQLIANQLAPATEYG 62

Query: 61  LRMQSRESVRRIISYAHRKNSKLVRSIAVFDANHELFVTSNFHPNFEKLMYPKDKPIPFL 120
           +   ++E +  +++             A     H  F+      + +K++   ++P    
Sbjct: 63  VISGNKEVLESLLT-------------ATLATPHVRFL--EVQDSTDKVLVYVEQPEQTR 107

Query: 121 SSSVIDENTLILRTPIISERTVLDNGDANPATP--------VMGYIAIELDLSSLRLQQY 172
           S +   +   + + P+  +R  L+N      +P         +G + + +   +   +Q 
Sbjct: 108 SHA---QQVEVFQAPVRLQRIALNNDFLQGNSPSVEASGEDYLGRVIVGMSSDAFSQRQQ 164

Query: 173 QEIFSAGLVLVIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMHGELD 232
           + +F A ++ +  +L + + A RL  +++RPI  + N V  I++G     +      EL 
Sbjct: 165 EILFKAAILALFALLFTFLVARRLATNLSRPIRDIGNAVKAIQQGDYSTPLPIVDDAELG 224

Query: 233 TLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKS 292
            L + IN +A  L +   E QH   QA + L +T E+              A++A   KS
Sbjct: 225 ALSRHINNLAEGLGQASRE-QH---QAMAQLIKTREE--------------AEKANSAKS 266

Query: 293 EFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKL 352
           EFLA MSHELRTP+NGV+G  + +  T+LT+ Q +Y     +S  +LL +INDILDFS++
Sbjct: 267 EFLAMMSHELRTPMNGVLGMLQLLETTRLTDEQHEYTALASESTEHLLKVINDILDFSRI 326

Query: 353 EAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKI-DPKIPRGVVGDPLRIQQVL 411
           E   L LE+IPF   E++         SA ++ L + L + D      V GDP RI+Q+L
Sbjct: 327 ERSALELEHIPFNLAELVGSCAQSFQHSAAQRKLGLDLLVPDDMQALQVQGDPTRIRQIL 386

Query: 412 TNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADA 471
            NL+GN++KFTE+G + V  + +AL  +++     VRD+GIGI      ++F AF QAD 
Sbjct: 387 VNLIGNALKFTEQGRVTVQCQWQALDHELLWFTCTVRDSGIGIPAESLERMFDAFQQADN 446

Query: 472 SISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTT---------ELP 522
           SISRRYGGTGLGL I + L   MGG +   S   QGS F   + L  +          LP
Sbjct: 447 SISRRYGGTGLGLPIARTLAERMGGTLRAQSEEGQGSVFTLEIPLALSRQTPPTLAPRLP 506

Query: 523 LNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEVT 562
              G        R++LL+E N     +V+  L   G  V+
Sbjct: 507 TGSGDG----EGRNVLLVEDNPVNQTVVEAMLRSLGFTVS 542



 Score =  104 bits (260), Expect = 2e-26
 Identities = 55/139 (39%), Positives = 82/139 (58%)

Query: 643 LAAQQPQLANTSLPKPQADKLPLCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIE 702
           L+ Q P      LP    D     V+ V+DNP N  ++ A+L+     V   T G +A+ 
Sbjct: 493 LSRQTPPTLAPRLPTGSGDGEGRNVLLVEDNPVNQTVVEAMLRSLGFTVSIATDGAQAVR 552

Query: 703 QAQSRQFDIILMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMD 762
            A+S  F+ ILMD ++P +DG  A + I+QL G  + P+IA+TA+A+ G+R+  L AGM+
Sbjct: 553 SAESLIFEAILMDCRLPIIDGYEATRQIRQLPGCGEVPIIALTANALQGDREACLAAGMN 612

Query: 763 DYLTKPIEEHILQQVLVHW 781
           DYL KP + + LQQ+L  W
Sbjct: 613 DYLAKPFKRNDLQQILQRW 631