Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 951 a.a., BarA sensory histidine kinase (= VarS = GacS) from Pseudomonas fluorescens FW300-N2E2

 Score =  542 bits (1396), Expect = e-158
 Identities = 340/935 (36%), Positives = 526/935 (56%), Gaps = 49/935 (5%)

Query: 3   QRYGLRARVMTLTLAPTLIIGLLLSALFSFNRYHDLETQVINSGASIIEPLAIASEDALR 62
           ++ G++ RV+ LTL PT ++ L+L   F++ +  +L  Q++  G  I E LA     A+ 
Sbjct: 38  KKLGIKGRVLLLTLLPTSLMALVLGGYFTWMQQSELHAQLLQRGEMIAEQLAPLVAPAMS 97

Query: 63  MQSRESVRRIISYAHRKNSKLVRSIAVFDANHELFVTSNFHPNFEKLMYPKDKPIPFLSS 122
            Q  + + RI + +  +    VR++     +      +   P       P+      L  
Sbjct: 98  RQDIDLLERIATQSLEQAD--VRAVTFLAPDRVPLAHAG--PTMLNRA-PEGNSTQLLQR 152

Query: 123 SVIDENTLILRTPIISERTVLDNGDANP--ATPVMGYIAIELDLSSLRLQQYQEIFSAGL 180
           +  D    +L  P+  +   L  G+  P  A  ++G++ +EL  S + L+ Y+ +F++ L
Sbjct: 153 TGNDATRYLL--PVFGKHRNLA-GELIPEEADRLLGWVELELSHSGMLLRGYRSLFASLL 209

Query: 181 VLVIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINA 240
           ++  G+ L+G+ A R+   + RP++ +K  V +++ GHL+ R+      ELD L  GIN 
Sbjct: 210 LIAAGLCLTGLLALRMGRTINRPLSQIKQAVAQLKDGHLETRLPPLGSQELDELASGINR 269

Query: 241 MAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSH 300
           MA +L     E+QHSIDQAT D+R+ LE +EIQN+ELD+A+K A EA+R+KSEFLANMSH
Sbjct: 270 MASTLQNAQEELQHSIDQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSH 329

Query: 301 ELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALE 360
           E+RTPLNG++GFT  + K++LT  Q DYL TIEKSA++LL IIN+ILDFSK+EAGKL L+
Sbjct: 330 EIRTPLNGILGFTHLLQKSELTPRQLDYLGTIEKSADSLLGIINEILDFSKIEAGKLVLD 389

Query: 361 NIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIK 420
           +IPF  +++L++ + + A +AH K LE+   +    P  +VGDPLR++Q+LTNLV N+IK
Sbjct: 390 SIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIK 449

Query: 421 FTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGT 480
           FT  G I     +    +D + L+  ++DTGIG+S +    LFQAFSQAD S+SR+ GGT
Sbjct: 450 FTREGTIVARAMLEDEHEDSVQLRISIQDTGIGLSNQDVRALFQAFSQADNSLSRQPGGT 509

Query: 481 GLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELPLNDGYNADSLNHRHLLLI 540
           GLGLVI+++LV  MGGEI + S   +GS FW +LRL  T     D      L  R + ++
Sbjct: 510 GLGLVISKRLVEQMGGEIGVDSTPGEGSEFWISLRLPKTRDDAED-LPGPPLLGRRVAVL 568

Query: 541 EPNMQAAAIVQQTLVQSGLEVTYRSAIP----------EEQHVYDYVLLNLAPSKETNPT 590
           E +  A   +Q  L   GL+VT  + +           +     D  +L +  S +  P 
Sbjct: 569 ENHELARQALQHQLEDCGLQVTPFNTLESLTNGITIAHQTDQAIDLAVLGIT-SNDMPPE 627

Query: 591 LVELWVQRALAMTHNVIVGVPSTELALADQLMQRYPVKCISKPLSRKKLLQTLA-AQQPQ 649
            +   +     +   V+V  P+TE  L    +     +  +KP   +KL + L+    P+
Sbjct: 628 RLNQHIWDLEHLGCKVLVLCPTTEQTLYHLSVPNPHSQLQAKPACTRKLRRALSDLVNPR 687

Query: 650 LANTSLPKPQADKLPLCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQF 709
              +   +P + + P  V+ VDDNPANL L+  LL++    V++  SG  A++  Q   F
Sbjct: 688 PTRSDPHEPVSSRAPK-VLCVDDNPANLLLVQTLLEDMGAKVLAVESGYAAVKAVQKETF 746

Query: 710 DIILMDIQMPHMDGVTACKAIKQLKGYR---DTPVIAVTAHAMAGERDRLLKAGMDDYLT 766
           D++LMD+QMP MDG  + +A++Q +  R     P++A+TAHAMA E+  LL++GMDDYLT
Sbjct: 747 DLVLMDVQMPGMDGRQSTEAVRQWESERHCTPLPIVALTAHAMANEKRALLQSGMDDYLT 806

Query: 767 KPIEEHILQQVLVHWSPHTRSKQVAKVT--PPDGAAVISNALPSSPPAEEAIIDWPVALR 824
           KPI E  L QV++ W+      Q  + +   P G+ ++             ++D    LR
Sbjct: 807 KPISERQLAQVVLKWTGLALRNQSPERSGDAPGGSELL-------------VLDHEEGLR 853

Query: 825 QSANKEDLAKEMLGMLVDYLREVETVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVPRL 884
            +A K DLA +ML ML+  L      +  A+E  ++ A  L+  +H+LHG+  Y GVP+L
Sbjct: 854 LAAGKADLAADMLAMLLASLEADREAIRQAIEANDHNA--LIERVHRLHGATRYCGVPQL 911

Query: 885 RKICASLEQALRN-----GASIDELEPELFELQDE 914
           R  C   E  L+        +++ELE  +  L  E
Sbjct: 912 RAACQRSETLLKQQDPKAADALEELERAINRLASE 946