Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1353 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  299 bits (766), Expect = 7e-85
 Identities = 220/672 (32%), Positives = 338/672 (50%), Gaps = 45/672 (6%)

Query: 274  NVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIE 333
            + EL  AK  A+ A   KS FLANMSHE+RTP+N VIG +  +  T L + Q   L  ++
Sbjct: 625  SAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNTALNDQQRQLLTKLQ 684

Query: 334  KSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKID 393
             +   LL IINDILD +K+EAG++ LE+ PF  +++L+E+  L    A EKGL  ++ + 
Sbjct: 685  IAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTPQAQEKGLRFSVNVV 744

Query: 394  PKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIG 453
              +P  ++GD LR+ Q+L NLVGN++KFT  G +DV+V       D   L+F V+DTG G
Sbjct: 745  ASLPGQLIGDALRVNQILMNLVGNALKFTSVGGVDVTVSREDDHADTCCLRFSVQDTGCG 804

Query: 454  ISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFT 513
            I      QLF  F+QADAS +RR+GGTGLGL + + L   MGG I + S L  GS FW  
Sbjct: 805  IPGDVLGQLFSPFTQADASTTRRFGGTGLGLSVVRGLAEQMGGRIGVESELGTGSEFWVE 864

Query: 514  LRLHTTELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEVT-------YRSA 566
            L    ++  L       SL    ++L+  + Q++  +Q+     G  V         R+A
Sbjct: 865  LPFQISQSDLEPSGPGSSL---EVMLLSDDAQSSMALQRLCRGLGWRVASLTGEHDLRTA 921

Query: 567  IPEEQHVYDYVLLNLAPSKETNPTLVELWVQRALAMTHNVIVGVPSTELALADQLMQRYP 626
            + E  HV +  L ++       P + E  VQ+ +  T   ++ V S+E+       + +P
Sbjct: 922  LQERNHV-NAALPDVLLVDWQQPQVEE--VQQLIEATPLPVILVTSSEIR-----AELHP 973

Query: 627  V--KCISKPLSRKKLLQTLAAQQPQLANTSLPKPQADKLP---------LCVMAVDDNPA 675
            +  K + KPL    L   + A   +   ++    QA ++          L ++ VDD+  
Sbjct: 974  LVDKVLLKPLDSSALFNAVNACIARYQGSTERVIQATRMDTSMTLWLSGLHLLLVDDSEI 1033

Query: 676  NLKLITALLQERVEYVVSCTSGQEAIEQAQSRQ--FDIILMDIQMPHMDGVTACKAIKQL 733
            NL++ + LLQ++   V +C++G  A+E+ +     FD +LMD+QMP MDG  A + ++  
Sbjct: 1034 NLEVASLLLQQQGAVVQTCSNGLLALERLRQTPDFFDAVLMDVQMPEMDGYEATRRLRSE 1093

Query: 734  KGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWSPHTRSKQVAKV 793
             G    PV+A+TA A+A ER +   AGMDD+LTKP++   L + +       R   +A  
Sbjct: 1094 LGLTRLPVLALTAGALAEERRQAELAGMDDFLTKPLDPAALIRAVRRAVERVRGAPLAV- 1152

Query: 794  TPPDGAAVISNALPSSPPAEEAIIDWPVALRQSANKEDLAKEMLGMLVDY--LREVETVV 851
                G  +   +  S+ P  E I    VA R   +       +     ++    E E+V+
Sbjct: 1153 ----GTLLQEASTGSAWPVIEGIDTQEVAARLGNDVPLFLSSLRRFFSEFAAFGESESVL 1208

Query: 852  NTALEDEEYPASDLLHHIHKLHGSCSYSGVPRLRKICASLEQALRNGASIDELEPEL--- 908
              A ++ +   +DL    HKL GS    G  ++       E  LRN A  ++    L   
Sbjct: 1209 ARARQNPDQTMADL----HKLRGSALLLGATQVGLHAGQAETLLRNAADPEQAVRALSAA 1264

Query: 909  FELQDEMAKVLE 920
            F    E   VLE
Sbjct: 1265 FRSLQERTPVLE 1276