Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 645 a.a., Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  249 bits (637), Expect = 3e-70
 Identities = 173/580 (29%), Positives = 281/580 (48%), Gaps = 61/580 (10%)

Query: 3   QRYGLRARVMTLTLAPTLIIGLLLSALFSFNRYHDLETQVINSGASIIEPLAIASEDALR 62
           + + +  R   ++L P L++  LL + F+F R  DL  ++ ++G  I   LA A E  + 
Sbjct: 4   RHWDINTRTQIISLGPALLLTALLISFFTFVRIQDLRQELNHTGQLIANQLATAVEPGVT 63

Query: 63  MQSRESVRRIISYAHRKNSKLVRSIAVFDANHELFVTSNFHPNFEKLMYPKDKPIPFLSS 122
               E ++ ++       S  VR + + D+++   +               D+P     +
Sbjct: 64  TGDIEGLKALMRATLSMPS--VRYVEIQDSSNTAVIYI-------------DQP---REN 105

Query: 123 SVIDENTLILRTPIISERTVLDNGDANPAT-----------PVMGYIAIELDLSSLRLQQ 171
                   +   P+  +RT +      PA              +G + + +   +   +Q
Sbjct: 106 EQQTRQMEVFLAPVQPQRTTIHGNPGAPAAGKGQPAQGASQSYLGRVLVGMSSEAFSRRQ 165

Query: 172 YQEIFSAGLVLVIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMHGEL 231
            + +  AG++ ++ +L + + A  L   ++RPI+ M   +  I++G     +      EL
Sbjct: 166 QEILLKAGVLAMVALLFAFLLARSLALSLSRPISDMGEALKAIQQGDYHTPMPVSDDAEL 225

Query: 232 DTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVK 291
             L + IN +A +L    +E Q S+ Q    L +T E+              A++A R K
Sbjct: 226 GALARHINNLAENLHRASLEQQRSVAQ----LIQTREE--------------AEQANRAK 267

Query: 292 SEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSK 351
           S+FLA MSHELRTP+NGV+G  + +  T +T+ Q++Y     +S  +LL +INDILDFS+
Sbjct: 268 SDFLAMMSHELRTPMNGVLGMLQLLETTHMTHEQSEYATLATESTEHLLRVINDILDFSR 327

Query: 352 LEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKI-PRGVVGDPLRIQQV 410
           +E   L +E IPF   E++    +    SA ++ L + L I P +    V+GDP RI+Q+
Sbjct: 328 IERDALQMEGIPFNLAELVSASTHAFNHSAAQRNLLLELHIQPGLETMNVIGDPTRIRQI 387

Query: 411 LTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQAD 470
           L NL+GN++KFTERG + V      L D+ +     V+D+GIGI   +   +F AF QAD
Sbjct: 388 LVNLIGNALKFTERGKVCVDARWAMLDDERLHFTCAVQDSGIGIDAERLESMFDAFKQAD 447

Query: 471 ASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE---------L 521
           +SISRRYGGTGLGL I + L   MGG +   S+   GS F   + L  +          L
Sbjct: 448 SSISRRYGGTGLGLPIARTLAERMGGTLYAESKEGSGSLFTLQIPLPLSRDASVAIAKPL 507

Query: 522 PLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEV 561
            + D +  +    R +LL+E N     +VQ  L   G EV
Sbjct: 508 SILDAHGRE----RSILLVEDNPVNRTVVQAMLRNLGCEV 543



 Score = 99.4 bits (246), Expect = 7e-25
 Identities = 50/115 (43%), Positives = 73/115 (63%)

Query: 667 VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTA 726
           ++ V+DNP N  ++ A+L+     V     G EA+ +A++    +ILMD ++P MDG  A
Sbjct: 519 ILLVEDNPVNRTVVQAMLRNLGCEVDIAVDGAEAVMKARAGNHALILMDCRLPVMDGYEA 578

Query: 727 CKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHW 781
            + I+QL G    P+IA+TA+A+ G+RD  L+AGMDDYL KP +   LQQVL  W
Sbjct: 579 TRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRW 633